View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_10 (Length: 350)
Name: NF3154_low_10
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 50593926 - 50593604
Alignment:
| Q |
17 |
agttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaaggg |
116 |
Q |
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| T |
50593926 |
agttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaaggg |
50593827 |
T |
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| Q |
117 |
aaaagggtgagggaatgagtggaaataagtagtcgaaatgtagagaacagaggctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaa |
216 |
Q |
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| T |
50593826 |
aaaagggtgagggaatgagtggaaataagtagtcgaaatgtagagaacatatgctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaa |
50593727 |
T |
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| Q |
217 |
cgttcaaagcaatgcggtggaatggatttcttcaactgaccaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcag |
316 |
Q |
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| T |
50593726 |
cgttcaaagcaatgtggtggaatggatttcttcaactgaccaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcag |
50593627 |
T |
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| Q |
317 |
tgacatggcctccagctcccttt |
339 |
Q |
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| T |
50593626 |
tgacatggccgccagctcccttt |
50593604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 312
Target Start/End: Complemental strand, 1897023 - 1896773
Alignment:
| Q |
61 |
acaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaatgtaga |
160 |
Q |
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| T |
1897023 |
acaccagtgagaatgcaaccttggagaagttaataaataggctaaaggatgaagggaaaaaggcgagggatggagtggaagtatgtagtgcaaatgtaga |
1896924 |
T |
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| Q |
161 |
gaacagaggctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgcggtggaatggatttcttcaactgaccaac |
260 |
Q |
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| T |
1896923 |
gaaagaagcctattcaaaagtaaaaaataacatagaagaattagaatagaatagaacattaaaaa-aatatggtggaatggatttcttcaaccggccaac |
1896825 |
T |
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| Q |
261 |
tgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagag |
312 |
Q |
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| T |
1896824 |
tgtgaattgtggctttatgcgtggaacccttgagagatgattgagtttagag |
1896773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 23031146 - 23031080
Alignment:
| Q |
19 |
ttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
85 |
Q |
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| T |
23031146 |
ttactaaatgcatgatggccacattcatgtgcaatgacccaaactccggttagaatgcatccttgga |
23031080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 37019973 - 37019913
Alignment:
| Q |
25 |
aatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
85 |
Q |
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| T |
37019973 |
aatgcatggtggccacactcatgtgcaatgacccaaacaccggtaaggatgcaaccttgga |
37019913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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