View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_11 (Length: 346)
Name: NF3154_low_11
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_11 |
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| [»] scaffold1880 (1 HSPs) |
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| [»] scaffold1462 (1 HSPs) |
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Alignment Details
Target: scaffold1880 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 364 - 99
Alignment:
| Q |
1 |
aatgtcggttatcttgagcctttttcgttctttaataagttgaatagtttgatcctccttggttgtattgcaatgaatgcaaagccccttgctgtatcaa |
100 |
Q |
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| T |
364 |
aatgtcggttatgttgagcctttttcgttctttaataagttgaatagtttgatcctccgtggttgtagtgcaatgaaagcaaagccccttgcattatcaa |
265 |
T |
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| Q |
101 |
gtttgtcacttatcaatttaagtataattaataaattttctggatttccctacattgaactatctgctccatgtctttcttcccttactttagccagtat |
200 |
Q |
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| T |
264 |
gtttgtcacttatcaatttaagtatgattaatgattttcctcgatgtacttactttgagatatctgctccatctctttcttcccttactttagccggtat |
165 |
T |
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| Q |
201 |
taatctgtgaagatactacgtgggagcagtcttgcttttgttacagaactaaattttggtaccacatt |
268 |
Q |
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| T |
164 |
t--cctgttaagatactacgtgggagcagtctggcttttgttaaagaactaaattttggtacaacatt |
99 |
T |
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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 18316285 - 18316540
Alignment:
| Q |
1 |
aatgtcggttatcttgagcctttttcgttctttaataagttgaatagtttgatcctccttggttgtattgcaatg---aatgcaaagccccttgctgtat |
97 |
Q |
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| T |
18316285 |
aatgtcggttatgttgagcctttttcggtcttcaaaaagttgaatagtttgatcctccgtggttgtgctacaaagaataatgcaaagatcct---tatat |
18316381 |
T |
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| Q |
98 |
caagtttgtcacttatcaatttaagtataattaataaattttctggatttccctacattgaactatctgctccatgtctttcttcccttactttagccag |
197 |
Q |
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| T |
18316382 |
caagtttgacgcttatcaatttaactatcgataataatcttcccggatttagctacattgaactatctgctccacgtctttcttccattactttaaccgg |
18316481 |
T |
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| Q |
198 |
tattaatctgtgaagatactacgtgggagcagtcttgcttttgttacagaactaaattttg |
258 |
Q |
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| T |
18316482 |
tact--cctgttgcgatactatgcgagaggagtcttgcttttgttaaagaactaaattttg |
18316540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1462 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 1538 - 1587
Alignment:
| Q |
143 |
gatttccctacattgaactatctgctccatgtctttcttcccttacttta |
192 |
Q |
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| T |
1538 |
gatttctctacattaaactatctgctccatgtctttcttccattacttta |
1587 |
T |
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