View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_12 (Length: 343)
Name: NF3154_low_12
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 33938946 - 33938621
Alignment:
| Q |
1 |
gagttttatttatcccagttactcccttcttcaacgcaaccggcacacgccactatacaaaaccgacatcaaaaccaaactatatataagaagctagatt |
100 |
Q |
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| T |
33938946 |
gagttttatttatcccagttactcccttcttcaacgcaaccggcacacgccactatacaaaaccgacatcaaaaccaaactatatataagaagctagatt |
33938847 |
T |
|
| Q |
101 |
cacattttattaacaacacccctcacaaatccacttgataattcatacttgataccccctagcaaaagaaaattcataatattattacacttttgttatt |
200 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33938846 |
catattttattaacaacacccctcacaaagccacttgataattcgtacttgatacaccctagcaaaagaaaattcataatattattacacttttgttatt |
33938747 |
T |
|
| Q |
201 |
tgcatatacaagtttataaactcttgaagagacctttgtccttcaatacagtagtttatccggttcgagtgattaatctttgcaactgctttagaacgat |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
33938746 |
tgcatatataagtttataaactcttgaagagacctttgtccttcaatacactagtttatccggttcgagtgattaatctttgcatctgcgttagaacgat |
33938647 |
T |
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| Q |
301 |
atttgattttcgtaagctcaaaaaca |
326 |
Q |
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||||||||||| |||||||||||||| |
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| T |
33938646 |
atttgattttcataagctcaaaaaca |
33938621 |
T |
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