View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_13 (Length: 332)
Name: NF3154_low_13
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 40811227 - 40811522
Alignment:
| Q |
14 |
aaatcacaaacaatatatatagtacacgtgaatgttacggtttaaggtaccaaacatcaatactaactagtagtaaccagaagcaacaacaacaataatt |
113 |
Q |
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| T |
40811227 |
aaatcacaaacaatatatatagtacacgtgaatgttacggtttaaggtaccaaacatcaatactaactagtagtaaccagaagcaacaacaacaataat- |
40811325 |
T |
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| Q |
114 |
aatagtactactacgtaacttaaaatttataaaaaa-ttaaatcacgcattctattttgctttgtacccagaaagaatccagcaaaaatgtagtaaaatg |
212 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |
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| T |
40811326 |
---agtactactacgtaacttaaaatttataaaaaaattaaatcacgcattctattttgctttgttctcagaaagaatccagcaaaaatgta---aaatg |
40811419 |
T |
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| Q |
213 |
tttttatgttgatttataatttagtggagttgtcaaacatgcagatgcaacaatgcatgtgcttgtggtgatggtagtggaaaatagatatatgatatga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40811420 |
tttttatgttgatttataatttagtggagttgtcaaacatgcagatgcaacaatgcatgtgcctgtggtgatggtagtggaaaatagatatatgatatga |
40811519 |
T |
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