View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_15 (Length: 319)
Name: NF3154_low_15
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_15 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 8632048 - 8631769
Alignment:
| Q |
1 |
atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatcaagcaaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
8632048 |
atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatccagcaaaaac |
8631950 |
T |
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| Q |
101 |
ttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgc |
200 |
Q |
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| T |
8631949 |
ttataacttagactacttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgattgtcttattgc |
8631850 |
T |
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| Q |
201 |
aaatataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatat |
281 |
Q |
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|||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
8631849 |
gaatataatataaatatcatacatgttagtcgtaactagcaatttaaaaataatttgttcaaaaacagtcttcatctatat |
8631769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 37108463 - 37108536
Alignment:
| Q |
146 |
aaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtca |
219 |
Q |
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| T |
37108463 |
aaagttgtgataaatttattgtgtcccatatcattatatttgattgcgttattacaaataaaatttaaatgtca |
37108536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 37609070 - 37609285
Alignment:
| Q |
1 |
atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatcaagcaaaaac |
100 |
Q |
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| T |
37609070 |
atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatccagcaaaaac |
37609168 |
T |
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| Q |
101 |
ttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgc |
200 |
Q |
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|| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
37609169 |
ttttaacttagacta-ttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgattgtcttattgc |
37609267 |
T |
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| Q |
201 |
aaatataatataaatgtc |
218 |
Q |
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| T |
37609268 |
gaatataatataaatgtc |
37609285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 22861313 - 22861403
Alignment:
| Q |
134 |
ttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcatacat |
224 |
Q |
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| T |
22861313 |
ttataccagtgaaagtttgtgagaaatttattttatttcaaagcattatatttgattgtcttattgcaaatgtaatataaatagcatacat |
22861403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 122 - 297
Target Start/End: Original strand, 72685 - 72858
Alignment:
| Q |
122 |
taagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcata |
221 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
72685 |
taagataaaatcttatatcagtgaaa-gttgaaataaatttattttgtttcatgtcattatattcgatt-tcttattgtgaatataaggtaaatgtcata |
72782 |
T |
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| Q |
222 |
catgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatatcagacccgtgcgatag |
297 |
Q |
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||||||||| ||||||||||||||||| || ||||||| |||| |||||||||||||||||| | ||||||||||| |
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| T |
72783 |
catgttagtagcaactaacaatttaaagatcatttgtttaaaactaatcttcatctatatcatatccgtgcgatag |
72858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 46673531 - 46673457
Alignment:
| Q |
205 |
ataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctat |
279 |
Q |
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|||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||| |
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| T |
46673531 |
ataatataaatgtcttacatgttagtcacaactagcaatttaaaaataatttgtccaaaaacaatcttcatctat |
46673457 |
T |
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