View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_19 (Length: 207)
Name: NF3154_low_19
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_19 |
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| [»] scaffold1880 (1 HSPs) |
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| [»] scaffold1462 (1 HSPs) |
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Alignment Details
Target: scaffold1880 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 422 - 595
Alignment:
| Q |
15 |
cagagagtctggaaagaatggtttttgataaacccaagggtttgtataagcggcaagcttaagtgttgttagtgtctgaaacgtagatatagaagacagg |
114 |
Q |
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| T |
422 |
cagatagtctggaaagaatgctttgtgataaatccaagggtttgtataaacggcaagcttaagtgttgttagtgtctgaaacgtagatatagaagacagg |
521 |
T |
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| Q |
115 |
attgactgggaattcatatcactactattaatgagcataaaatcaagagtgtgcagtgcagttgaatcatcgcg |
188 |
Q |
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| T |
522 |
attgactggcgattcttatccctactagtaatgagcataaaatcaagagtgtgcagtgcagttgaatcatcgcg |
595 |
T |
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Target: scaffold1462 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 1338 - 1230
Alignment:
| Q |
15 |
cagagagtctggaaagaatggtttttgataaacccaagggtttgtataagcggcaagcttaagtgttgttagtgtctgaaacgtagatatagaagacagg |
114 |
Q |
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| T |
1338 |
cagatagtcaggaaaaaatgctttttgataaaccctagggtgtattttaacatgaagcttaagtgacgttagtgtctgaaacgaagacatagatgacagg |
1239 |
T |
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| Q |
115 |
attgactgg |
123 |
Q |
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| T |
1238 |
attgactgg |
1230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 18316175 - 18316057
Alignment:
| Q |
67 |
gcaagcttaagtgttgttagtgtctgaaacgtagatatagaagacaggattgactgggaattcatatcactactattaatgagcataaaatcaagagtgt |
166 |
Q |
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| T |
18316175 |
gcaagcttaagtgacgttagtgtttgaaacgaaggcattgaagacaggattgactggcagtcctcgttactacgagtaacaagcttaaaatcaagagtgc |
18316076 |
T |
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| Q |
167 |
gcagtgcagttgaatcatc |
185 |
Q |
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| T |
18316075 |
gtagtgcaattgaatcatc |
18316057 |
T |
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