View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_2 (Length: 694)
Name: NF3154_low_2
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Complemental strand, 39225243 - 39224655
Alignment:
| Q |
18 |
aaaggaagcaattatgtaaactgattctgaattatgttatgttacagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225243 |
aaaggaagcaattatgtaaactgattctgaattatgttatgttacagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggg |
39225144 |
T |
|
| Q |
118 |
gtggtgctactagaacttttaacagggagaaggccagtgggagattttggtgaagaaggaatggatattgttcaatggaccaagttaaaaactgattgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225143 |
gtggtgctactagaacttttaacagggagaaggccagtgggagattttggtgaagaaggaatggatattgttcaatggaccaagttaaaaactgattgga |
39225044 |
T |
|
| Q |
218 |
acaaagaaagtgtggtgaagattcttgatgggaggttacataacaatattcctttagatgaagcaatgcagttattctttgtagctatgtgttgtgttga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225043 |
acaaagaaagtgtggtgaagattcttgatgggaggttacataacaatattcctttagatgaagcaatgcagttattctttgtagctatgtgttgtgttga |
39224944 |
T |
|
| Q |
318 |
ggaacaaagtgtggaacgaccaaccatgagagaagtggttgaaatgctaggacaagtaaagcaaccaaatatatttcaagtgtaatgagtgagtcatcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224943 |
ggaacaaagtgtggaacgaccaaccatgagagaagtggttgaaatgctaggacaagtaaagcaaccaaatatatttcaagtgtaatgagtgagtcatcaa |
39224844 |
T |
|
| Q |
418 |
ggaaattattataaataagagaaagaagaaataaagaataaggtgtgacttgcatgtatgtgttcatgttggctaggtgttaatttttcctaactagcta |
517 |
Q |
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| T |
39224843 |
ggaaattattataaataagagaaagaagaaataaagaataaggtgtgacttgtatctatgtgttcatgttggctaggtgttaa-ttttcctaactagcta |
39224745 |
T |
|
| Q |
518 |
gtttgtgttatttgaaaattttgaagattttgtttaactatttattagctagagttggacctgttcnnnnnnntaaaactatagttggta |
607 |
Q |
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| T |
39224744 |
gtttgtgttatttgagaattttgaagattttgtttaactatttattagctagagttggacctgttcaaaaaaataaaactatagttggta |
39224655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 4979782 - 4979833
Alignment:
| Q |
62 |
cagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctt |
113 |
Q |
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| T |
4979782 |
cagagtatgcctatacattgaaagttgatgagaaaagcgatgtatacagctt |
4979833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 62 - 396
Target Start/End: Original strand, 16737026 - 16737357
Alignment:
| Q |
62 |
cagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggggtggtgctactagaacttttaacagggagaaggccagtgggaga |
161 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| || || ||||| || ||||| |||||||| | ||||||| |||||||||||| || |
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| T |
16737026 |
cagaatatgcatacacattgaaagttgatgagaaaagtgatgtgtatagttttggagttgtgctgctagaactcatcacagggaaaaggccagtggggga |
16737125 |
T |
|
| Q |
162 |
ttttggtgaagaaggaatggatattgttcaatggaccaagttaaaaactgattggaacaaagaaagtgtggtgaagattcttgatgggaggttacataac |
261 |
Q |
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||||| |||||||| | || ||||||||||||||||| | |||||| ||||||||||||| | ||| ||||||| ||||||| |||| ||| | | |
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| T |
16737126 |
ttttgaggaagaaggtttagacattgttcaatggaccaaaatgaaaactaattggaacaaagatatggtgatgaagatccttgatgagaggctacct--c |
16737223 |
T |
|
| Q |
262 |
aatattcctttagatgaagcaatgcagttattctttgtagctatgtgttgtgttgaggaacaaagtgtggaacgaccaaccatgagagaagtggttgaaa |
361 |
Q |
| |
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|| ||||||||| ||||||||| || | || ||||| || |||| |||||| | ||||| |||||||| ||||||||||||| ||||||||||| | |
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| T |
16737224 |
aa-attcctttacatgaagcaaaacaagtgttttttgtggcaatgttatgtgttcatgaacatagtgtggagagaccaaccatgagggaagtggttgaga |
16737322 |
T |
|
| Q |
362 |
tgctaggacaagtaaagcaaccaaatatatttcaa |
396 |
Q |
| |
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|||| | ||||| |||| ||| | | ||||||||| |
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| T |
16737323 |
tgcttgcacaagcaaagtaacaatacatatttcaa |
16737357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 40403273 - 40403165
Alignment:
| Q |
62 |
cagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggggtggtgctactagaacttttaacagggagaaggccagtgggaga |
161 |
Q |
| |
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|||| |||||||||||||||||||| || || ||||| || || |||||||| || ||||| || ||||| ||| || |||| |||| ||||| ||||| |
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| T |
40403273 |
cagagtatgcatacacattgaaagtcgacgaaaaaagcgacgtctacagcttcggtgtggtacttctagagcttgtagcaggaagaaaaccagttggaga |
40403174 |
T |
|
| Q |
162 |
ttttggtga |
170 |
Q |
| |
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|||||||| |
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| T |
40403173 |
atttggtga |
40403165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 26736743 - 26736808
Alignment:
| Q |
61 |
acagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggggtggtgcta |
126 |
Q |
| |
|
||||||||||||||||| | ||||||||||| ||||||||||| || || || || ||||||||| |
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| T |
26736743 |
acagaatatgcatacactctcaaagtggatgaaaaaagtgatgtgtatagtttcggagtggtgcta |
26736808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 43716624 - 43716664
Alignment:
| Q |
91 |
gagaaaagtgatgtatacagctttggggtggtgctactaga |
131 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
43716624 |
gagaagagtgatgtatacagctttggtgtggtcctactaga |
43716664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 17825063 - 17825004
Alignment:
| Q |
60 |
tacagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggggt |
119 |
Q |
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||||||||||||||||||| || ||||| |||||||| ||||||| || || |||||||| |
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| T |
17825063 |
tacagaatatgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggt |
17825004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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