View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3154_low_4 (Length: 592)

Name: NF3154_low_4
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3154_low_4
NF3154_low_4
[»] chr3 (44 HSPs)
chr3 (13-582)||(22615411-22615980)
chr3 (288-477)||(21937173-21937362)
chr3 (203-464)||(22186923-22187184)
chr3 (188-464)||(22027920-22028196)
chr3 (188-464)||(22115005-22115281)
chr3 (281-453)||(22657347-22657519)
chr3 (197-464)||(22052662-22052929)
chr3 (188-464)||(22034437-22034713)
chr3 (281-477)||(30989562-30989758)
chr3 (285-464)||(21945641-21945820)
chr3 (242-464)||(22179391-22179613)
chr3 (301-425)||(22208053-22208177)
chr3 (187-475)||(22104642-22104930)
chr3 (301-464)||(21930454-21930617)
chr3 (293-463)||(22621185-22621355)
chr3 (281-463)||(22648429-22648611)
chr3 (391-472)||(22458751-22458832)
chr3 (391-472)||(22481732-22481813)
chr3 (57-166)||(22621500-22621609)
chr3 (293-464)||(22436904-22437075)
chr3 (39-157)||(22104482-22104600)
chr3 (293-464)||(22630709-22630880)
chr3 (92-166)||(22657652-22657726)
chr3 (315-463)||(18967258-18967404)
chr3 (283-456)||(22468226-22468399)
chr3 (504-582)||(22115330-22115408)
chr3 (242-432)||(22431454-22431643)
chr3 (59-157)||(30989894-30989992)
chr3 (93-157)||(18967574-18967638)
chr3 (105-157)||(22179242-22179294)
chr3 (504-582)||(18967130-18967208)
chr3 (57-153)||(21945401-21945497)
chr3 (57-157)||(22034294-22034394)
chr3 (94-157)||(22186802-22186865)
chr3 (320-434)||(2749082-2749196)
chr3 (504-582)||(21937398-21937476)
chr3 (536-582)||(21945901-21945947)
chr3 (504-582)||(22358145-22358223)
chr3 (283-417)||(22368229-22368363)
chr3 (504-582)||(22442882-22442960)
chr3 (536-582)||(22657209-22657255)
chr3 (504-582)||(30989448-30989526)
chr3 (105-157)||(21936978-21937030)
chr3 (105-157)||(22114910-22114962)
[»] chr1 (9 HSPs)
chr1 (284-430)||(34975398-34975544)
chr1 (285-430)||(34989234-34989379)
chr1 (281-443)||(34980173-34980337)
chr1 (389-453)||(2305766-2305830)
chr1 (115-163)||(34980004-34980052)
chr1 (536-582)||(34975659-34975705)
chr1 (536-582)||(34980439-34980485)
chr1 (125-163)||(34989071-34989109)
chr1 (536-582)||(34989494-34989540)
[»] chr8 (2 HSPs)
chr8 (301-428)||(27294581-27294708)
chr8 (124-157)||(27294439-27294472)
[»] chr4 (1 HSPs)
chr4 (403-463)||(29610842-29610902)
[»] chr7 (4 HSPs)
chr7 (128-157)||(873151-873180)
chr7 (128-157)||(1234428-1234457)
chr7 (536-580)||(872870-872914)
chr7 (536-580)||(1234147-1234191)


Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 13 - 582
Target Start/End: Complemental strand, 22615980 - 22615411
Alignment:
Q  13 tcatcacaaatatccagattcactccataagattgttcaattgatcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtca 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  22615980 tcatcccaaatatccagattcactccataagattgttcaattgatcaaaactttgatccctcgccatcgaattgggtcaaagattcaagaagttaagtcg 22615881  T
Q  113 tctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacctcaagaatcaagtggaatacaaaatgctaaatggtatgaccctcgat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615880 tctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacctcaagaatcaagtggaatacaaaatgctaaatggtatgaccctcgat 22615781  T
Q  213 tggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttggtaaaaggaagagtagagcgcactgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615780 tggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttggtaaaaggaagagtagagcgcactgt 22615681  T
Q  313 tgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatgg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615680 tgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatgg 22615581  T
Q  413 atcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcacaagtctttgcctcgggatattactacagaaatggata 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22615580 atcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcacaagtctttgcctcgggatattcctacagaaatggata 22615481  T
Q  513 gagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615480 gagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 22615411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 288 - 477
Target Start/End: Original strand, 21937173 - 21937362
Alignment:
Q  288 taaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttg 387  Q
    |||| ||||| | ||||||||||||||| |||||||| |||||||||||||| || ||||||||||| || ||||| | |||||| |||||||| ||       
T  21937173 taaagggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgt 21937272  T
Q  388 tggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcacaa 477  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   | | ||||||||||||| ||||||||||| ||||||| ||||    
T  21937273 tggacactttgattgtcgtgtatggatcacagtgtctcaagcatatgatgttgaagggttgttgaaggacatgttgctcaagttttacaa 21937362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 203 - 464
Target Start/End: Original strand, 22186923 - 22187184
Alignment:
Q  203 gaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttggtaaaaggaagagtag 302  Q
    ||||||||| ||| | ||||| |||| ||||||  ||| |||||||||||| ||| | | ||| |||||||||| |  ||| ||||||| ||||| | ||    
T  22186923 gaccctcgagtggctgctctttacatcgaggaagctgaggttgtgggatttgaagcgccaagaaaaagattgattgagtggatggtaaagggaagggaag 22187022  T
Q  303 agcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattg 402  Q
    ||||||||||| | |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |    ||||||||||||||    
T  22187023 agcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacactttgattg 22187122  T
Q  403 tcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
    |||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22187123 tcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22187184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 188 - 464
Target Start/End: Original strand, 22027920 - 22028196
Alignment:
Q  188 aatgctaaatggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttgg 287  Q
    ||||| |||||| | ||||||||| ||| | ||||| |||| ||||||  ||| |||||||||||| ||| | | ||| |||||||||  |  |||||||    
T  22027920 aatgccaaatggaacgaccctcgagtggctgctctttacatcgaggaagctgaggttgtgggatttgaagcgccaagaaaaagattgactgattggttgg 22028019  T
Q  288 taaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttg 387  Q
    || | ||||| | |||||||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |       
T  22028020 tacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcat 22028119  T
Q  388 tggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
     |||||||||||||||||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22028120 gggacactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22028196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 188 - 464
Target Start/End: Original strand, 22115005 - 22115281
Alignment:
Q  188 aatgctaaatggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttgg 287  Q
    ||||| |||||| | ||||||||| ||| | ||||| || | ||||||  ||| |||||||||||| |||   | ||| |||||||||| |  ||| |||    
T  22115005 aatgccaaatggcacgaccctcgagtggctgctctttacgttgaggaagctgaggttgtgggatttgaagcaccaagacaaagattgattgattggatgg 22115104  T
Q  288 taaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttg 387  Q
    || | ||||| | ||||||||||||| | |||||||| |||||||||||||| || |||||||||||  | ||||| |||||||| ||||||||  |       
T  22115105 tatagggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactctatcaaagaaagtttttgacagcaaggatatcat 22115204  T
Q  388 tggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||| |||||||    
T  22115205 tggacactttgattgtcgtgtatggatcacagtgtctcaatcatatgaagttgaagggttgttgagggatatgttgc 22115281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 281 - 453
Target Start/End: Complemental strand, 22657519 - 22657347
Alignment:
Q  281 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 380  Q
    ||||||||||| ||||||  ||||||||||||  | ||||| ||||||||||||||||| || ||||| |||||||| || || |||||||| ||||| |    
T  22657519 tggttggtaaagggaagatcagagcgcactgtcatatctgtcgtgggaatgggagggcaaggaaaaactactcttgctaaaaaagtttttgacagcaaag 22657420  T
Q  381 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgag 453  Q
    |||||  |||||||||||| |||||||| |||||||||||||| ||||| |||| |||||||| |||||||||    
T  22657419 aggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatatagaagtgttgttgag 22657347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 197 - 464
Target Start/End: Original strand, 22052662 - 22052929
Alignment:
Q  197 tggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttggtaaaaggaa 296  Q
    ||||||||||||||| ||| | ||||| || |  |||||  ||| |||||||||||| |||   | ||| |||||||||| |  ||| ||||||| ||||    
T  22052662 tggtatgaccctcgagtggctgctctttacgtcaaggaagctgaggttgtgggatttgaagtaccaagaaaaagattgattgattggatggtaaagggaa 22052761  T
Q  297 gagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactt 396  Q
    | | |||||||||||| || ||| |||| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |   |||||| ||    
T  22052762 gggaagagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacattt 22052861  T
Q  397 tgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
    ||||||||| |||||||| |||||||||||||||||   | | ||||||||||||||||| |||||||    
T  22052862 tgattgtcgggtatggattacagtgtctcaatcatatgatgttgaagggttgttgagggaaatgttgc 22052929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 188 - 464
Target Start/End: Original strand, 22034437 - 22034713
Alignment:
Q  188 aatgctaaatggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttgg 287  Q
    ||||| |||||| | ||||||||| | | | ||||| || | ||||||| ||| |||||||||||| |||   | ||| |||||||||| |  ||| |||    
T  22034437 aatgccaaatggcacgaccctcgagtcgctgctctttacgttgaggaaactgaggttgtgggatttgaagcaccaagacaaagattgattgattggatgg 22034536  T
Q  288 taaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttg 387  Q
    || | ||||| | |||||||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |       
T  22034537 tacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcat 22034636  T
Q  388 tggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
     ||||||||||||| |||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22034637 gggacactttgattatcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22034713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 477
Target Start/End: Complemental strand, 30989758 - 30989562
Alignment:
Q  281 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 380  Q
    ||||||||||| |||||||  |||||||| ||  | ||||| || || ||||||||||| ||||||||||||||| | ||||| |||||||| | || |     
T  30989758 tggttggtaaagggaagagatgagcgcacggtaatttctgtagtaggcatgggagggcaaggtaaaaccactcttacgaagaaagtttttgacaacagga 30989659  T
Q  381 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcacaa 477  Q
    | ||   ||||||||||||||||||||||||||||| ||||||||||||||| | | | |||||||||||||||||||||||||  |||||| ||||    
T  30989658 atgtcattggacactttgattgtcgtgtatggatcatagtgtctcaatcatatactgttgaagggttgttgagggacatgttgctaaagttttacaa 30989562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 285 - 464
Target Start/End: Original strand, 21945641 - 21945820
Alignment:
Q  285 tggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggt 384  Q
    ||||||| ||||| |  ||||||||||| || || ||||| |||||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||    
T  21945641 tggtaaagggaagggaggagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgt 21945740  T
Q  385 ttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
       | ||||||||||||||| |||||||||||| ||||||||||||||   | | ||||| |||||||||||||||||||    
T  21945741 catttgacactttgattgtcttgtatggatcactgtgtctcaatcatatgatgttgaaggattgttgagggacatgttgc 21945820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 464
Target Start/End: Original strand, 22179391 - 22179613
Alignment:
Q  242 gttgtgggatttcaagagtctagagaaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagg 341  Q
    |||||||||||| ||| | | ||| |||||||||| |  ||| ||||| | |||||   |||||||||||| || |  |||||||||||||||||||| |    
T  22179391 gttgtgggatttgaagcgccaagaaaaagattgattgattggatggtacagggaaggaaagagcgcactgtggtattcgtggtgggaatgggagggcaag 22179490  T
Q  342 gtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtataga 441  Q
    | ||||| ||||| |||||||| |||||||| ||||||||  |   ||||||||||||||||||||||||||| ||||||||||||||||| | |   ||    
T  22179491 gaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggattacagtgtctcaatcatataatgctga 22179590  T
Q  442 agggttgttgagggacatgttgc 464  Q
    ||| |||||||| ||||||||||    
T  22179591 aggattgttgagagacatgttgc 22179613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 22208053 - 22208177
Alignment:
Q  301 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 400  Q
    ||||| |||||||||||| ||||| || ||||||||||| |||||||| |||||||||||| | |||||||| ||||| ||||||  |||| ||||||||    
T  22208053 agagctcactgttgtctcggtggttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaagaggttattggatactttgat 22208152  T
Q  401 tgtcgtgtatggatcacagtgtctc 425  Q
    |||||||||||||||||||||||||    
T  22208153 tgtcgtgtatggatcacagtgtctc 22208177  T

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Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 187 - 475
Target Start/End: Original strand, 22104642 - 22104930
Alignment:
Q  187 aaatgctaaatggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttcaagagtctagagaaagattgatcggctggttg 286  Q
    |||||| |||||| | ||||||||| | | | ||||| |||| ||||||  ||| |||||||||||  |||   | ||| |||||||||| |  ||| ||    
T  22104642 aaatgccaaatggcacgaccctcgagttgctgctctttacattgaggaagctgatgttgtgggattcaaagcaccaagaaaaagattgattgattggatg 22104741  T
Q  287 gtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggttt 386  Q
    ||||| ||||  | |||||||||||| || || ||||| |||||||||||||| || ||||| ||||| |||||||  |||||||| |||||||| ||      
T  22104742 gtaaagggaacggaagagcgcactgtagtttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagcaaggatgtaa 22104841  T
Q  387 gtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcac 475  Q
     ||||||||||||||||| ||| |||||||||||||| || || || | | | |||||| | ||||||||||||||||| ||| |||||    
T  22104842 ttggacactttgattgtcatgtttggatcacagtgtcgcagtcctataatgttgaagggattttgagggacatgttgcgaaagcttcac 22104930  T

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Target: chr3; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 301 - 464
Target Start/End: Original strand, 21930454 - 21930617
Alignment:
Q  301 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 400  Q
    |||||||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |   |||||| ||| ||    
T  21930454 agagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacattttcat 21930553  T
Q  401 tgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
    |  || ||||||||||||||||||||||||||   | | |||||||||||||||||||||||||    
T  21930554 ttccgagtatggatcacagtgtctcaatcatatgatgttgaagggttgttgagggacatgttgc 21930617  T

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Target: chr3; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 293 - 463
Target Start/End: Complemental strand, 22621355 - 22621185
Alignment:
Q  293 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 392  Q
    ||||||| |||||| |||||  |||||||||| ||||||||||| || || ||| ||||||||||||| || ||||| || ||||| |||||    ||||    
T  22621355 ggaagagaagagcgaactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 22621256  T
Q  393 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 463  Q
    |||| || | |||||||||| |||||||||| |||||||||  |||||| |||||| ||||  ||||||||    
T  22621255 acttcgaatatcgtgtatgggtcacagtgtcacaatcatacgatatagaggggttgctgagatacatgttg 22621185  T

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Target: chr3; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 281 - 463
Target Start/End: Complemental strand, 22648611 - 22648429
Alignment:
Q  281 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 380  Q
    ||||||||| | ||||||  ||||||||||||  |||||||||| || ||||||||||  || ||||||||||||||||  || || ||||| ||||| |    
T  22648611 tggttggtagagggaagatcagagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttgacagcaaag 22648512  T
Q  381 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 463  Q
    ||||    ||||||||||| | |||||||||||||| |||||  |||||||||  || |||||||||| |||| | |||||||    
T  22648511 aggtagcgggacactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttg 22648429  T

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Target: chr3; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 472
Target Start/End: Complemental strand, 22458832 - 22458751
Alignment:
Q  391 acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt 472  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  22458832 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttt 22458751  T

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Target: chr3; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 472
Target Start/End: Complemental strand, 22481813 - 22481732
Alignment:
Q  391 acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt 472  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  22481813 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttt 22481732  T

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Target: chr3; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 22621609 - 22621500
Alignment:
Q  57 tcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttcca 156  Q
    |||||||| ||||||||||||||||||| | ||| ||||||| ||   |||||||||||||   |  ||||||||||||||||||||| |||||||||||    
T  22621609 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 22621510  T
Q  157 aatccaacct 166  Q
    ||||||||||    
T  22621509 aatccaacct 22621500  T

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Target: chr3; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 464
Target Start/End: Complemental strand, 22437075 - 22436904
Alignment:
Q  293 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 392  Q
    ||||||||||||||  | ||||||||| | || |||||||||||||| || ||||| ||||| |||||||| |||||||| | ||   | || |    ||    
T  22437075 ggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaac 22436976  T
Q  393 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
    | ||||| |||| |||||||||||||||||||||||||||||||| ||||   |||||||||||||| ||||    
T  22436975 aatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaagaaaaattgttgagggacattttgc 22436904  T

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Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 22104482 - 22104600
Alignment:
Q  39 ataagattgttcaattgatcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaag 138  Q
    ||||||||| ||| ||  |||||||| ||| ||||||||||||||| |   |  |||||| ||| ||||||||||||||| ||  |||||||||||||||    
T  22104482 ataagattgctcacttactcaaaactatgacccctcgccatcgaatagcagctgagattcaagatgttaagtcatctgttcgtgggatcaaggaaagaag 22104581  T
Q  139 tgaaagatatggcttccaa 157  Q
    |||| ||||||||||||||    
T  22104582 tgaacgatatggcttccaa 22104600  T

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Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 293 - 464
Target Start/End: Complemental strand, 22630880 - 22630709
Alignment:
Q  293 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 392  Q
    ||||||| ||| ||||| ||||||||| | || ||||||||||| | ||| ||||||||||||||||||||  ||||||| | |    ||||   |  ||    
T  22630880 ggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaac 22630781  T
Q  393 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 464  Q
    |||||||||||| || ||||||||| ||||||| | |||||| |||||||   |||||||||||||| ||||    
T  22630780 actttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattgttgagggacattttgc 22630709  T

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Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 22657726 - 22657652
Alignment:
Q  92 aagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacct 166  Q
    ||||||| |||  ||||||||| |||||||  |||||| |||||||||||||||||||| |||||||||||||||    
T  22657726 aagattcaagagattaagtcatttgtttgtgggatcaaagaaagaagtgaaagatatggtttccaaatccaacct 22657652  T

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Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 463
Target Start/End: Complemental strand, 18967404 - 18967258
Alignment:
Q  315 tctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggat 414  Q
    |||||||||| |||||||||||||| || ||||| ||||| || ||||  |||| ||| | |||||| ||   |||||||||| |||||| | |||||||    
T  18967404 tctctgtggtaggaatgggagggcaaggaaaaacaactctagcaaagagagtttctgacaacaaggatgtcattggacactttaattgtcttatatggat 18967305  T
Q  415 cacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 463  Q
      ||||||||||||||||   | ||||||||||||| || |||||||||    
T  18967304 --cagtgtctcaatcatatgatgtagaagggttgttaagcgacatgttg 18967258  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 456
Target Start/End: Complemental strand, 22468399 - 22468226
Alignment:
Q  283 gttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggag 382  Q
    ||||||| | ||||||| ||||||||| ||||||||  | || ||||||||||| | ||| ||||||||| | |||||||| |||||||| | | |  ||    
T  22468399 gttggtagagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaag 22468300  T
Q  383 gtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgaggga 456  Q
    ||   |  ||| |||||||||| |||||||||||| ||||||| | |||||| |||||||   |||||||||||    
T  22468299 gtcgttaaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgaggga 22468226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 582
Target Start/End: Original strand, 22115330 - 22115408
Alignment:
Q  504 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    |||||||| |||| | |||||  ||||| || ||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  22115330 aaatggatcgaggattattaactgatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt 22115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 242 - 432
Target Start/End: Complemental strand, 22431643 - 22431454
Alignment:
Q  242 gttgtgggatttcaagagtctagagaaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagg 341  Q
    |||||||||||| ||||| | ||||| | |||||| |  ||| ||||||| |||| || ||||| ||| || |||||  | |||| ||||||||| | ||    
T  22431643 gttgtgggatttgaagagccaagagacatattgattgattggctggtaaatggaaaagaagagctcacagtggtctccattgtgg-aatgggaggactgg 22431545  T
Q  342 gtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcata 432  Q
    | |||||||||||  ||||||| |||||||| | |||   |||   |  |||||||||||||||| |||||||||||||||||||| ||||    
T  22431544 gaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctcaaccata 22431454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 30989992 - 30989894
Alignment:
Q  59 aaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    |||||| |||||||||| | |||||| |  ||  |||||| |||  ||||||| |||||| ||  ||||||||||||||||||||||||||||||||||    
T  30989992 aaaactgtgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggcttccaa 30989894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 18967638 - 18967574
Alignment:
Q  93 agattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    ||||||||||  ||||||||| |||||||  |||||||||||||||||| | |||||||||||||    
T  18967638 agattcgagacattaagtcatatgtttgtcggatcaaggaaagaagtgacaaatatggcttccaa 18967574  T

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Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 22179242 - 22179294
Alignment:
Q  105 ttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    |||||||||||||| ||| |||||||||||||||||| | |||||||||||||    
T  22179242 ttaagtcatctgttcgtaggatcaaggaaagaagtgataaatatggcttccaa 22179294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 18967208 - 18967130
Alignment:
Q  504 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    |||||||| ||| |||||| |  ||||| |||||||||||||| | | | |||||||| ||||||||||||||||||||    
T  18967208 aaatggatcgagagtcattgacagatgaagtaagaaactacttacgggataagaggtatgttgttgtgtttgatgatgt 18967130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 21945401 - 21945497
Alignment:
Q  57 tcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggctt 153  Q
    |||||||| |||||||||| | |||||| |  ||  |||||| ||| |||||||||| |||| ||  ||||||||||||||||| || |||||||||    
T  21945401 tcaaaactatgatccctcgtcgtcgaatagcatctgagattcaagatgttaagtcatatgttcgtgggatcaaggaaagaagtggaacatatggctt 21945497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 22034294 - 22034394
Alignment:
Q  57 tcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttcca 156  Q
    |||||||| |||||||||| | |||||| |  ||  |||| | ||| |||||| |||||||| ||  |||||  ||||||||||||||||||||||||||    
T  22034294 tcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagatgttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttcca 22034393  T
Q  157 a 157  Q
    |    
T  22034394 a 22034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 22186802 - 22186865
Alignment:
Q  94 gattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    ||||| ||| |||||||||||||||  |  |||||  |||||||||||||||||||||||||||    
T  22186802 gattcaagatgttaagtcatctgttattgagatcacagaaagaagtgaaagatatggcttccaa 22186865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 2749082 - 2749196
Alignment:
Q  320 gtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacag 419  Q
    ||||| ||||||||||| |  || ||||||||||||||||||   |||||||| |||||  |||| |  | |||||||||||||||||  ||  ||||||    
T  2749082 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacactttgattgtcgtgcttgcgtcacag 2749181  T
Q  420 tgtctcaatcataca 434  Q
    | |||||||| ||||    
T  2749182 tttctcaatcttaca 2749196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 582
Target Start/End: Original strand, 21937398 - 21937476
Alignment:
Q  504 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    |||||||| |||||||||| || |||||  | |||||||||||||    ||||||||||||| | ||||||||||||||    
T  21937398 aaatggatcgagggtcattgatggatgaaattagaaactacttgcgaagaaagaggtacgttatcgtgtttgatgatgt 21937476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 21945901 - 21945947
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    ||||| |||||||||||||||||||| ||||| || |||||||||||    
T  21945901 agaaattacttgcagcaaaagaggtatgttgtcgtctttgatgatgt 21945947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 22358223 - 22358145
Alignment:
Q  504 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    |||||||| ||  ||||||| | ||||| || ||||||||||||||  |||| ||||| ||||| ||||||||||||||    
T  22358223 aaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22358145  T

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Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 417
Target Start/End: Complemental strand, 22368363 - 22368229
Alignment:
Q  283 gttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggag 382  Q
    ||||||| | ||||||| | | ||||| ||||||||  | || ||||||||||| | ||| ||||||||||| |||||||| |||||||| | | |  ||    
T  22368363 gttggtagagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaag 22368264  T
Q  383 gtttgtggacactttgattgtcgtgtatggatcac 417  Q
    ||   |  |||||||||||||||| ||||||||||    
T  22368263 gtcgttaaacactttgattgtcgtttatggatcac 22368229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 22442960 - 22442882
Alignment:
Q  504 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    |||||||| ||  ||||||| | ||||| || ||||||||||||||  |||| ||||| ||||| ||||||||||||||    
T  22442960 aaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22442882  T

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Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 582
Target Start/End: Complemental strand, 22657255 - 22657209
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  22657255 agaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 22657209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 30989526 - 30989448
Alignment:
Q  504 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    |||||||| |||||||||| |  ||||| || ||||||||||||| |  ||| ||||| || |||||||||||||||||    
T  30989526 aaatggatcgagggtcattgactgatgaagtgagaaactacttgcggttaaaaaggtatgtcgttgtgtttgatgatgt 30989448  T

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Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 21936978 - 21937030
Alignment:
Q  105 ttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    |||||||||||||| ||  |||||||||||||||||| |||||| | ||||||    
T  21936978 ttaagtcatctgttcgtgggatcaaggaaagaagtgatagatatagtttccaa 21937030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 22114910 - 22114962
Alignment:
Q  105 ttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    ||||| |||||||| ||  |||||  |||||||||||||||||||||||||||    
T  22114910 ttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttccaa 22114962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 284 - 430
Target Start/End: Original strand, 34975398 - 34975544
Alignment:
Q  284 ttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggagg 383  Q
    |||||||| ||||||||||||||||||||  ||||||| || || ||||||||||| || |||||||||||||| || || |||||||||||||| ||||    
T  34975398 ttggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagagg 34975497  T
Q  384 tttgtggacactttgattgtcgtgtatggatcacagtgtctcaatca 430  Q
    ||   ||||||||||| ||||||||||||||||||||||| ||||||    
T  34975498 ttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca 34975544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 285 - 430
Target Start/End: Original strand, 34989234 - 34989379
Alignment:
Q  285 tggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggt 384  Q
    ||||||| ||||||||||||||||||||  ||||||| || || ||||||||||| || |||||||||||||| || || |||||||||||||| |||||    
T  34989234 tggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggt 34989333  T
Q  385 ttgtggacactttgattgtcgtgtatggatcacagtgtctcaatca 430  Q
    |   ||||||||||| ||||||||||||||||||||||| ||||||    
T  34989334 tgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca 34989379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 443
Target Start/End: Original strand, 34980173 - 34980337
Alignment:
Q  281 tggttggtaaaaggaagagtagagcgcactgttg--tctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaa 378  Q
    ||||||||||| ||||||||||||||||||||    ||||||| || |||||||||||||| || ||||  |||||||| || || ||||||||||||||    
T  34980173 tggttggtaaagggaagagtagagcgcactgtgtcatctctgtagttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaa 34980272  T
Q  379 ggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaag 443  Q
     ||||||   ||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||    
T  34980273 agaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaag 34980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 2305830 - 2305766
Alignment:
Q  389 ggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgag 453  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||  ||||||||    
T  2305830 ggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgag 2305766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 34980004 - 34980052
Alignment:
Q  115 tgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaa 163  Q
    |||||||  |||||| |||||||||||||||||||| ||||||||||||    
T  34980004 tgtttgtgggatcaaagaaagaagtgaaagatatggtttccaaatccaa 34980052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 34975659 - 34975705
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  34975659 agaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 34975705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 34980439 - 34980485
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  34980439 agaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 34980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 34989071 - 34989109
Alignment:
Q  125 atcaaggaaagaagtgaaagatatggcttccaaatccaa 163  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  34989071 atcaaagaaagaagtgaaagatatggtttccaaatccaa 34989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 34989494 - 34989540
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 582  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  34989494 agaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 34989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 301 - 428
Target Start/End: Original strand, 27294581 - 27294708
Alignment:
Q  301 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 400  Q
    |||| ||||||| || |||||||| ||||||||||| || || ||||||||||| | |||||| |||||||| |||||||| ||    |||||| ||||     
T  27294581 agagggcactgtagtttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgac 27294680  T
Q  401 tgtcgtgtatggatcacagtgtctcaat 428  Q
    | ||||||||||||||||||||||||||    
T  27294681 tatcgtgtatggatcacagtgtctcaat 27294708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 27294439 - 27294472
Alignment:
Q  124 gatcaaggaaagaagtgaaagatatggcttccaa 157  Q
    ||||||||||||||||||||||||||||||||||    
T  27294439 gatcaaggaaagaagtgaaagatatggcttccaa 27294472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 29610902 - 29610842
Alignment:
Q  403 tcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 463  Q
    |||||||||||||||||| || |||||||||| ||||||||| ||| | |||| |||||||    
T  29610902 tcgtgtatggatcacagtatcacaatcatacaatatagaaggattgctaaggggcatgttg 29610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 873180 - 873151
Alignment:
Q  128 aaggaaagaagtgaaagatatggcttccaa 157  Q
    ||||||||||||||||||||||||||||||    
T  873180 aaggaaagaagtgaaagatatggcttccaa 873151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 1234457 - 1234428
Alignment:
Q  128 aaggaaagaagtgaaagatatggcttccaa 157  Q
    ||||||||||||||||||||||||||||||    
T  1234457 aaggaaagaagtgaaagatatggcttccaa 1234428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 872914 - 872870
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgat 580  Q
    ||||| ||||||||||||||||  ||||||||||||||| |||||    
T  872914 agaaattacttgcagcaaaagacatacgttgttgtgtttaatgat 872870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 1234191 - 1234147
Alignment:
Q  536 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgat 580  Q
    ||||| ||||||||||||||||  ||||||||||||||| |||||    
T  1234191 agaaattacttgcagcaaaagacatacgttgttgtgtttaatgat 1234147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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