View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_low_5 (Length: 552)
Name: NF3154_low_5
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 22 - 529
Target Start/End: Complemental strand, 13744612 - 13744104
Alignment:
| Q |
22 |
taagtaaatgtatcggtctatgttacattattcaacaacaaacgtgaagacgtaatgaatgcccaacttcaaaccaaatgggaggtcaaacctgagagat |
121 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13744612 |
taagaaaatgtattggtctatgttacattattcaacaacaaacgtgatgacataatcaatgcccaacttcaaaccaaatgggagatcaaacctgagagat |
13744513 |
T |
|
| Q |
122 |
gtgaagcaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtgataatgcaatggtcgtagagtaacacagctcttccacaaataaatcat |
221 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
13744512 |
ctgaaccaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtggtaatgcaatggtcgtaaagtaacacagctcttccacaaataattcat |
13744413 |
T |
|
| Q |
222 |
tagcaaaaataaagacaagctcaacataaagcaagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagttta |
321 |
Q |
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| |||||||||||||| || |||||||||||||||||| | ||||||||||||||||| || |||||||| |||||||||| | ||||||| |
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| T |
13744412 |
tggcaaaaataaagacgagttcaacataaagcaagagagggtctatttaagtaaaattacataattggataaaaaaaaccactaaaactatcaaagttta |
13744313 |
T |
|
| Q |
322 |
caaaataaacatagacttaaaaatcttaccgaagtcca-gtcagatgatgatccttcttcaatattactgttg-cagcttcacctggacgcttcattact |
419 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13744312 |
caaaataaacatggacataaaaatcttaccaaagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattact |
13744213 |
T |
|
| Q |
420 |
gattccatatctttgagaaattgatccgcatcaaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatag |
519 |
Q |
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|||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |
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| T |
13744212 |
gattccatctctttgaaaaattgatccacatcaaagttcacttccttattccttcacaagtcccaatataaatacatatcatcacaatgaagtaa-atag |
13744114 |
T |
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| Q |
520 |
caaaaccaca |
529 |
Q |
| |
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|||||||||| |
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| T |
13744113 |
caaaaccaca |
13744104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 253 - 534
Target Start/End: Original strand, 52268863 - 52269145
Alignment:
| Q |
253 |
caagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268863 |
caagagaagatctatttaagtaaaatttcacaattggataaaaaaa-gcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccc |
52268961 |
T |
|
| Q |
353 |
aagtccag-tcagatgatgatccttcttcaatattactgttg-cagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcat |
450 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268962 |
aagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcat |
52269061 |
T |
|
| Q |
451 |
caaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggc |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52269062 |
caaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggc |
52269145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 52268682 - 52268729
Alignment:
| Q |
193 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268682 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
52268729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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