View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3154_low_6 (Length: 552)

Name: NF3154_low_6
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3154_low_6
NF3154_low_6
[»] chr5 (13 HSPs)
chr5 (195-534)||(2735960-2736307)
chr5 (15-66)||(2735811-2735862)
chr5 (80-127)||(2735847-2735894)
chr5 (195-271)||(7080547-7080624)
chr5 (195-255)||(8442176-8442236)
chr5 (195-255)||(43153054-43153114)
chr5 (195-262)||(12203164-12203231)
chr5 (197-262)||(35595973-35596038)
chr5 (195-251)||(9957199-9957255)
chr5 (211-262)||(20985516-20985567)
chr5 (195-257)||(38919869-38919929)
chr5 (213-262)||(12891083-12891132)
chr5 (211-255)||(22653688-22653732)
[»] chr3 (13 HSPs)
chr3 (198-271)||(43149321-43149394)
chr3 (195-262)||(35368628-35368695)
chr3 (195-262)||(29057665-29057732)
chr3 (195-262)||(50745566-50745633)
chr3 (195-257)||(29846883-29846945)
chr3 (195-262)||(48490500-48490567)
chr3 (212-262)||(11404947-11404997)
chr3 (224-262)||(32687947-32687985)
chr3 (195-257)||(43220133-43220195)
chr3 (195-257)||(49361827-49361889)
chr3 (214-271)||(27276770-27276827)
chr3 (213-262)||(45517644-45517693)
chr3 (211-271)||(20549363-20549423)
[»] chr4 (16 HSPs)
chr4 (195-262)||(7795031-7795098)
chr4 (195-262)||(31413773-31413840)
chr4 (195-257)||(36871160-36871222)
chr4 (195-255)||(1868887-1868947)
chr4 (211-262)||(6686079-6686130)
chr4 (211-262)||(29577423-29577474)
chr4 (195-257)||(54848155-54848217)
chr4 (198-262)||(9095957-9096021)
chr4 (195-255)||(24310515-24310575)
chr4 (195-255)||(46791985-46792045)
chr4 (211-255)||(51107435-51107479)
chr4 (211-262)||(4577590-4577641)
chr4 (211-262)||(36110167-36110218)
chr4 (201-262)||(46799779-46799840)
chr4 (195-271)||(21766564-21766640)
chr4 (195-271)||(27384193-27384269)
[»] chr1 (12 HSPs)
chr1 (195-262)||(50460699-50460766)
chr1 (198-262)||(35030749-35030813)
chr1 (195-262)||(11121498-11121565)
chr1 (195-262)||(16252746-16252813)
chr1 (213-262)||(8577489-8577538)
chr1 (195-255)||(30414881-30414941)
chr1 (214-262)||(48256943-48256991)
chr1 (211-262)||(14002729-14002780)
chr1 (211-262)||(31244720-31244771)
chr1 (195-257)||(3826807-3826869)
chr1 (195-271)||(4637942-4638018)
chr1 (275-303)||(36230194-36230222)
[»] chr2 (12 HSPs)
chr2 (195-261)||(11828808-11828874)
chr2 (195-262)||(45202119-45202186)
chr2 (195-262)||(40115532-40115599)
chr2 (195-271)||(27538893-27538970)
chr2 (195-271)||(6885458-6885534)
chr2 (195-262)||(22296116-22296183)
chr2 (195-262)||(38598336-38598403)
chr2 (198-271)||(8757564-8757637)
chr2 (212-257)||(28264562-28264607)
chr2 (213-262)||(38027602-38027651)
chr2 (196-257)||(38777909-38777970)
chr2 (214-262)||(19523388-19523436)
[»] chr6 (10 HSPs)
chr6 (211-259)||(7304115-7304163)
chr6 (195-262)||(9395324-9395391)
chr6 (195-262)||(16121169-16121236)
chr6 (195-262)||(2165287-2165354)
chr6 (195-262)||(2176920-2176987)
chr6 (197-255)||(17442841-17442899)
chr6 (195-257)||(32135423-32135485)
chr6 (219-260)||(8778861-8778902)
chr6 (213-262)||(22422185-22422234)
chr6 (195-255)||(25567484-25567544)
[»] scaffold0009 (1 HSPs)
scaffold0009 (211-262)||(5057-5108)
[»] chr7 (9 HSPs)
chr7 (195-262)||(24380708-24380775)
chr7 (195-262)||(25272608-25272675)
chr7 (195-262)||(27866524-27866591)
chr7 (195-257)||(33465031-33465093)
chr7 (211-262)||(17039190-17039241)
chr7 (195-262)||(37848607-37848674)
chr7 (195-262)||(38547277-38547344)
chr7 (195-262)||(40108141-40108208)
chr7 (195-262)||(49142504-49142571)
[»] chr8 (12 HSPs)
chr8 (195-271)||(14233622-14233698)
chr8 (195-262)||(6243051-6243118)
chr8 (195-262)||(13924028-13924095)
chr8 (195-262)||(25430663-25430730)
chr8 (195-257)||(41776192-41776254)
chr8 (213-262)||(27300381-27300430)
chr8 (195-259)||(38939179-38939243)
chr8 (211-262)||(20995045-20995096)
chr8 (200-270)||(30462700-30462771)
chr8 (195-262)||(37471660-37471727)
chr8 (195-257)||(23265346-23265408)
chr8 (213-262)||(22836126-22836175)
[»] scaffold0286 (1 HSPs)
scaffold0286 (195-262)||(17055-17122)
[»] scaffold0024 (1 HSPs)
scaffold0024 (211-271)||(48687-48747)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 195 - 534
Target Start/End: Original strand, 2735960 - 2736307
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgtttttat--caaaatagttgttcaaata 292  Q
    |||||||| ||| |||||||| | |||| |||||  || |||||||||||||||||||||||| | ||||| ||||| |  |||||||||||||||||||    
T  2735960 tgatatttatacggctattttagcacaattttctcacaaatatttacattatcttcttattctctttcattatttttgtaccaaaatagttgttcaaata 2736059  T
Q  293 tcattgctacatgataaaatccccgtctattttcnnnnnnn------caaaacactgatctcctctctgtgccaccgtctaccaccataacaggtttgtt 386  Q
    ||||||||||||||||||| |||| |||||||||             ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2736060 tcattgctacatgataaaaaccccttctattttcaaaaaaaaaaaaacaaaacactgatctcctatctgtgccaccgtctaccaccataacaggtttgtt 2736159  T
Q  387 ttctctcctccaatattttccatttttagcttcaacttgaaaattgatgaaaaccctaaccttactcaaattaactagatagaggaaatgaggcagatga 486  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2736160 ttctctcctccaatattttccatttttagcttcaacttggaaattgatgaaaaccctaaccttactcaaattaattagatagaggaaatgaggcagatga 2736259  T
Q  487 agccgttggagttgtttcacgatttggtcaaaacaacaaagaacgaac 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2736260 agccgttggagttgtttcacgatttggtcaaaacaacaaagaacgaac 2736307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 2735811 - 2735862
Alignment:
Q  15 cacagatcatcattaattgataatgttaaatatacatccaatgaggctatct 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2735811 cacagatcatcattaattgataatgttaaatatacatccaatgagtctatct 2735862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 2735847 - 2735894
Alignment:
Q  80 tccaatgagtctatctgacacattgtgaaagagtaaatatacatccaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2735847 tccaatgagtctatctgacacattgtgaaagagtaaatatacatccaa 2735894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 7080547 - 7080624
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttct-cattgttttt 271  Q
    |||||||||||||   |||||||||||||||||| || |||| | |||||||||||||||||| ||| ||||||||||    
T  7080547 tgatatttgtacaatcatttttgtacaactttctctctcatactcacattatcttcttattctctctccattgttttt 7080624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 8442176 - 8442236
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    |||||||||||||  ||||||||||||||||||| || |||||| |||||||||| |||||    
T  8442176 tgatatttgtacaattatttttgtacaactttctctctcatattcacattatctttttatt 8442236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 43153114 - 43153054
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||||||||| | |||||||||||||||||| || |||||| |||||||||| |||||    
T  43153114 tgatatttgtacaacaatttttgtacaactttctctctcatattcacattatctttttatt 43153054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 12203164 - 12203231
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||||| || |||  | |||||||||||||||||| ||||    
T  12203164 tgatatttgtacaaccatttttgtacaactttctctctcatgctcacattatcttcttattctctctc 12203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 35596038 - 35595973
Alignment:
Q  197 atatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||| | ||||||||||||||||||||  |||||| | ||| |||||||||||| ||||    
T  35596038 atatttgtacaaccatttttgtacaactttctttatcatattcatattttcttcttattctctctc 35595973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 9957255 - 9957199
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttct 251  Q
    |||||||||||||  |||||||||| ||||||||||| |||| | ||||||||||||    
T  9957255 tgatatttgtacaattatttttgtagaactttctttctcatactcacattatcttct 9957199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 20985567 - 20985516
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  20985567 atttttgtacaactttctctctcatactcacattatcttcttattctctctc 20985516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 38919869 - 38919929
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| |||||||||||||||||||  || |||| | ||||||| ||||||||||    
T  38919869 tgatatttgtacaactatttttgtacaactttc--tctcatactcacattattttcttattct 38919929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 12891132 - 12891083
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||| |||| || |||||| |||||||||||||||||| ||||    
T  12891132 ttttgtacaacattctctctcatattcacattatcttcttattctctctc 12891083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 22653688 - 22653732
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    |||||||||||||||||| || |||| | ||||||||||||||||    
T  22653688 atttttgtacaactttctctctcatactcacattatcttcttatt 22653732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 43149394 - 43149321
Alignment:
Q  198 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    |||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||    
T  43149394 tatttgtacaactatttttgtacaactttctttctcatactcacattatcttcttattctttctcattcttttt 43149321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 35368628 - 35368695
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  35368628 tgatatttgtacaactatttttgtacaactttctctctcatactcacattatcttcttattctctctc 35368695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 29057665 - 29057732
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  29057665 tgatatttgtacaaccatttttgtacaactttctctctcatactcacattatcttcttattctctctc 29057732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 50745566 - 50745633
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||   |||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  50745566 tgatatttgtacaatcatttttgtacaactttctctctcatactcacattatcttcttattctctctc 50745633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 29846945 - 29846883
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| | |||||||||||||||||| || |||| | ||||||| ||||||||||    
T  29846945 tgatatttgtacaaccatttttgtacaactttctctctcatactcacattatattcttattct 29846883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 48490567 - 48490500
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | | |||||||||||||||| || |||| | |||||||||| ||||||| ||||    
T  48490567 tgatatttgtacaaccacttttgtacaactttctctctcatactcacattatctttttattctctctc 48490500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 11404997 - 11404947
Alignment:
Q  212 tttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||| ||||    
T  11404997 tttttgtacaactttctctctcatacttacattatcctcttattctctctc 11404947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 32687985 - 32687947
Alignment:
Q  224 tttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  32687985 tttctttctcatatttacattatcttcttattctctctc 32687947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 43220195 - 43220133
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    |||||||| |||| | ||||||||| |||||||| || |||| | ||||||||||||||||||    
T  43220195 tgatatttttacaaccatttttgtaaaactttctctctcatactcacattatcttcttattct 43220133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 49361889 - 49361827
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    |||||||||||||   |||||||||||||||| | || |||| | ||||||||||||||||||    
T  49361889 tgatatttgtacaatcatttttgtacaactttttctctcatactcacattatcttcttattct 49361827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 27276770 - 27276827
Alignment:
Q  214 tttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||||||| | || |||||| |||||||||||||||||| |||| || |||||    
T  27276770 tttgtacaactttatctctcatattcacattatcttcttattctctctctttcttttt 27276827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 45517693 - 45517644
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||| ||||||||||  |||||| |||||||||||||||||| ||||    
T  45517693 ttttgtataactttctttttcatattcacattatcttcttattctctctc 45517644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 20549423 - 20549363
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||| ||| |||| || |||||| |||||||||||||||||| |||| || |||||    
T  20549423 atttttgtataacattctctctcatattcacattatcttcttattctctctctttcttttt 20549363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 7795031 - 7795098
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  7795031 tgatatttgtacaaccatttttgtacaactttctttctcatacttacattatcttcttattctctctc 7795098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 31413840 - 31413773
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||||||||||||||||||| || |||| | |||||||||||| ||||||||||    
T  31413840 tgatatttgtacaactatttttgtacaactttctctctcatactgacattatcttctaattctttctc 31413773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 36871222 - 36871160
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||  |||||||||||||||||    
T  36871222 tgatatttgtacaactatttttgtacaactttctctcttatattcgcattatcttcttattct 36871160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 1868947 - 1868887
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||||||||| | |||||||||||||||||| || |||| | ||||||||||||||||    
T  1868947 tgatatttgtacaaccatttttgtacaactttctatctcatactcacattatcttcttatt 1868887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 6686079 - 6686130
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||| || |||| |||||||||||||||||||||||||    
T  6686079 atttttgtacaacattctctctcatacttacattatcttcttattctttctc 6686130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 29577474 - 29577423
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||| ||||    
T  29577474 atttttgtacaactttctttctcatactcacattatcttcttattctctctc 29577423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 54848155 - 54848217
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| | ||||||||||||| |||| || |||||| ||||||| ||||||||||    
T  54848155 tgatatttgtacaaccatttttgtacaaccttctctctcatattcacattattttcttattct 54848217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 9095957 - 9096021
Alignment:
Q  198 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||  ||||||||||||| ||||| || |||| | |||||||||||||||||| ||||    
T  9095957 tatttgtacaattatttttgtacaattttctctctcatactcacattatcttcttattctctctc 9096021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 24310575 - 24310515
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||||||||| | |||||||||||||||||| || |||| | ||||| ||||||||||    
T  24310575 tgatatttgtacaaccatttttgtacaactttctctctcatactcacattttcttcttatt 24310515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 46792045 - 46791985
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    |||||||||| || | |||||||||||| |||||||| |||| | ||||||||||||||||    
T  46792045 tgatatttgtgcaacaatttttgtacaattttctttctcatactcacattatcttcttatt 46791985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 51107479 - 51107435
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||| |||||||||| || |||||||||||||||||||||||    
T  51107479 atttttgcacaactttctctctcatatttacattatcttcttatt 51107435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 4577590 - 4577641
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  4577590 atttttgtacaactttctctctcatactcacattatcttcttattctctctc 4577641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 36110167 - 36110218
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||| ||||    
T  36110167 atttttgtacaaccttctctctcatattcacattatcttcttattctctctc 36110218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 46799779 - 46799840
Alignment:
Q  201 ttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||| | ||||||||||||| |||| || |||| | |||||||||||||||||| ||||    
T  46799779 ttgtacaaccatttttgtacaaccttctctctcatactcacattatcttcttattctctctc 46799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 21766564 - 21766640
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||||| |   ||||||||||||| |||| || |||| | |||||||||||||||||| |||| || |||||    
T  21766564 tgatatttgtataatcatttttgtacaaccttctctctcatactcacattatcttcttattctctctctttcttttt 21766640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 27384193 - 27384269
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||||||| | |||||  ||||||||||| || |||||| | ||||| |||||||||| |||| || |||||    
T  27384193 tgatatttgtacaaccattttattacaactttctctctcatattcatattatattcttattctctctctttcttttt 27384269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 50460766 - 50460699
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||||| ||||    
T  50460766 tgatatttgtacaaccatttttgtacaactttctttctcatactcacattatcttcttattctctctc 50460699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 35030813 - 35030749
Alignment:
Q  198 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||| ||||    
T  35030813 tatttgtacaaccatttttgtacaactttctctctcatacttacattatcttcttattctctctc 35030749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 11121498 - 11121565
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | | |||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  11121498 tgatatttgtacaacaacttttgtacaactttctctctcatactcacattatcttcttattctctctc 11121565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 16252813 - 16252746
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||||| |  |||| | ||||||||||| |||||||||||    
T  16252813 tgatatttgtacaaccatttttgtacaactttctctttcatactcacattatcttcctattctttctc 16252746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 8577538 - 8577489
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||| |||| || ||||||||||||||||||||||||| ||||    
T  8577538 ttttgtacaaccttctctctcatatttacattatcttcttattctctctc 8577489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 30414881 - 30414941
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||||||||| | ||||||||||||| |||| || |||| | ||||||||||||||||    
T  30414881 tgatatttgtacaaccatttttgtacaaccttctctctcatactcacattatcttcttatt 30414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 48256943 - 48256991
Alignment:
Q  214 tttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||||| || |||||| |||||||||||||||||| ||||    
T  48256943 tttgtacaactttctctctcatattcacattatcttcttattctctctc 48256991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 14002780 - 14002729
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||| |||||||||||||| |||||||||||||| |||||| ||| ||||    
T  14002780 atttttatacaactttctttctcatatttacattatattcttactctctctc 14002729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 31244771 - 31244720
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||| ||||    
T  31244771 atttttgtacaacattctctctcatattcacattatcttcttattctatctc 31244720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 3826869 - 3826807
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| ||| ||||  |||||||| | || |||||| ||||||||||||||||||    
T  3826869 tgatatttgtacaactaatttttaacaactttatctctcatattcacattatcttcttattct 3826807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 4637942 - 4638018
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||||||| | |||||   |||||||||| ||  |||||||||||||| ||||||||| |||| || |||||    
T  4637942 tgatatttgtacaaccattttgtaacaactttctctcttatatttacattatcatcttattctctctctttcttttt 4638018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 36230222 - 36230194
Alignment:
Q  275 aaaatagttgttcaaatatcattgctaca 303  Q
    |||||||||||||||||||||||||||||    
T  36230222 aaaatagttgttcaaatatcattgctaca 36230194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 11828874 - 11828808
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttct 261  Q
    ||||||||||||| | |||||||||||||||||| || |||||| || |||||||||||||||||||    
T  11828874 tgatatttgtacaaccatttttgtacaactttctctctcatattcacgttatcttcttattctttct 11828808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 45202186 - 45202119
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||| ||||||||||| || |||||| |||||||||||||||||| ||||    
T  45202186 tgatatttgtacaaccatttttttacaactttctctctcatattcacattatcttcttattctctctc 45202119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 40115532 - 40115599
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| ||||||||||| || ||||| || |||| | |||||||||||||||||| ||||    
T  40115532 tgatatttgtacaactatttttgtataattttctctctcatactaacattatcttcttattctctctc 40115599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 27538970 - 27538893
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttct-cattgttttt 271  Q
    ||||||||||||| | |||||||||||||||||| |   ||| | |||||||||||||||||| ||| ||||||||||    
T  27538970 tgatatttgtacaaccatttttgtacaactttctctatgatactcacattatcttcttattctctctccattgttttt 27538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 6885534 - 6885458
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    |||| |||||||| |||||||| ||||| ||||| || |||| | |||||||||||||||||| |||| || |||||    
T  6885534 tgatttttgtacaactatttttatacaattttctctctcatactcacattatcttcttattctctctctttcttttt 6885458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 22296183 - 22296116
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||| ||||| ||  ||| | |||||||||||||||||| ||||    
T  22296183 tgatatttgtacaaccatttttgtacaattttctctctgatactcacattatcttcttattctctctc 22296116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 38598403 - 38598336
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||| | | ||||||||||||| |||| || |||| | |||||||||||||||||| ||||    
T  38598403 tgatatttgtataaccatttttgtacaaccttctctctcatactcacattatcttcttattctctctc 38598336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 8757564 - 8757637
Alignment:
Q  198 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    |||||||||| | |||||| ||||||||| | || |||| | |||||||||||||||||| |||| || |||||    
T  8757564 tatttgtacaaccatttttatacaactttatctctcatactcacattatcttcttattctctctctttcttttt 8757637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 28264562 - 28264607
Alignment:
Q  212 tttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||||||| || |||| | ||||||||||||||||||    
T  28264562 tttttgtacaactttctatctcatactcacattatcttcttattct 28264607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 38027651 - 38027602
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||| |||| || |||||| |||||||||||||||||| ||||    
T  38027651 ttttgtacaaccttctctctcatattcacattatcttcttattctctctc 38027602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 38777909 - 38777970
Alignment:
Q  196 gatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||   |||||| ||||| ||||| || |||||| ||||||||||||||||||    
T  38777909 gatatttgtacaatcatttttatacaattttctctctcatattcacattatcttcttattct 38777970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 19523436 - 19523388
Alignment:
Q  214 tttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  19523436 tttgtacaactttctctctcatactcacattatcttcttattctctctc 19523388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 7304163 - 7304115
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattcttt 259  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||    
T  7304163 atttttgtacaactttctctctcatatttacattatcttcttattcttt 7304115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 9395391 - 9395324
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||||||||||||||||||| |  |||| | |||||||||||||||||| ||||    
T  9395391 tgatatttgtacaactatttttgtacaactttctctttcatactcacattatcttcttattctctctc 9395324  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 16121169 - 16121236
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||||| |  |||| |||||||||||||||||||| ||||    
T  16121169 tgatatttgtacaaccatttttgtacaactttctctttcatacttacattatcttcttattctctctc 16121236  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 2165354 - 2165287
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||| | || |||| |  ||||||||||||||||| ||||    
T  2165354 tgatatttgtacaaccatttttgtacaactttatctctcatactcgcattatcttcttattctctctc 2165287  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 2176987 - 2176920
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||| | || |||| |  ||||||||||||||||| ||||    
T  2176987 tgatatttgtacaaccatttttgtacaactttatctctcatactcgcattatcttcttattctctctc 2176920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 17442841 - 17442899
Alignment:
Q  197 atatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||||||| | |||||||||||||||||| ||  ||| | ||||||||||||||||    
T  17442841 atatttgtacaaccatttttgtacaactttctctcttatactcacattatcttcttatt 17442899  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 32135485 - 32135423
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    |||||||||||||   |||||||||||||||||| |  |||| | ||||||||||||||||||    
T  32135485 tgatatttgtacaatcatttttgtacaactttctctatcatactcacattatcttcttattct 32135423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 8778902 - 8778861
Alignment:
Q  219 acaactttctttcacatatttacattatcttcttattctttc 260  Q
    |||||||||| ||||||| | |||||||||||||||||||||    
T  8778902 acaactttctctcacatactcacattatcttcttattctttc 8778861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 22422185 - 22422234
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  22422185 ttttgtacaactttctctctcatactcacattatcttcttattctctctc 22422234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 25567544 - 25567484
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttatt 255  Q
    ||||||| ||||| | |||||||||||||||| | || |||| | ||||||||||||||||    
T  25567544 tgatattcgtacaaccatttttgtacaactttatctctcatactcacattatcttcttatt 25567484  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 5108 - 5057
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  5108 atttttgtacaactttctctctcatatttatattatcttcttattctttctc 5057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 24380775 - 24380708
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||| |||||||||||||| |||| | |||||||||||||||||| ||||    
T  24380775 tgatatttgtacaaccatttttatacaactttctttctcatactcacattatcttcttattctctctc 24380708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 25272608 - 25272675
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||||| ||| ||| | |||||||||||||||||| ||||    
T  25272608 tgatatttgtacaaccatttttgtacaactttctctcatatactcacattatcttcttattctctctc 25272675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 27866591 - 27866524
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||| | || |||| | |||||||||||||||||| ||||    
T  27866591 tgatatttgtacaaccatttttgtacaactttatctctcatactcacattatcttcttattctctctc 27866524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 33465093 - 33465031
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| | |||||||||||| ||||| || |||| | ||||||||||||||||||    
T  33465093 tgatatttgtacaaccatttttgtacaattttctctctcatactcacattatcttcttattct 33465031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 17039190 - 17039241
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  17039190 atttttgtacaactttctctctcatactcacattatcttcttattctctctc 17039241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 37848674 - 37848607
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||   |||||||||||||||||| || |||| | | |||||||||||||||| ||||    
T  37848674 tgatatttgtacaatcatttttgtacaactttctctctcatactaatattatcttcttattctctctc 37848607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 38547344 - 38547277
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| ||||||||  ||||||||||||| |||| | ||||||| |||||| ||| ||||    
T  38547344 tgatatttgtacaactattttttgacaactttctttctcatactcacattatattcttactctctctc 38547277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 40108141 - 40108208
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||| |||||||| | |||||| ||||||||||| || |||| | |||||||||||||||||| ||||    
T  40108141 tgatgtttgtacaaccatttttatacaactttctctctcatactcacattatcttcttattctctctc 40108208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 49142571 - 49142504
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | ||||||||| || ||||| || |||| | |||||||||||||||||| ||||    
T  49142571 tgatatttgtacaaccatttttgtaaaattttctctctcatactcacattatcttcttattctctctc 49142504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 14233698 - 14233622
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||||||| |||||||| ||||||||||| || |||| |  ||||||||||||||||| |||| || |||||    
T  14233698 tgatatttgtacaactatttttttacaactttctctctcatactcgcattatcttcttattctctctctttcttttt 14233622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 6243051 - 6243118
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||   |||||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  6243051 tgatatttgtacaatcatttttgtacaactttctctctcatactcacattatcttcttattctctctc 6243118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 13924028 - 13924095
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||||| || |||  | |||||||||||||||||| ||||    
T  13924028 tgatatttgtacaaccatttttgtacaactttctctctcatgctcacattatcttcttattctctctc 13924095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 25430663 - 25430730
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | ||||||||||||| |||| || |||| | |||||||||||||||||| ||||    
T  25430663 tgatatttgtacaaccatttttgtacaaccttctatctcatactcacattatcttcttattctctctc 25430730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 41776192 - 41776254
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||||| |||||||||||||||||||| || |||| | |||| ||||||| |||||    
T  41776192 tgatatttgtacaactatttttgtacaactttctctctcatactcacatcatcttctcattct 41776254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 27300381 - 27300430
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||| || |||||| |||||||||||||||||| ||||    
T  27300381 ttttgtacaactttctctctcatattcacattatcttcttattctctctc 27300430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 38939243 - 38939179
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattcttt 259  Q
    |||||||| |||| |||||||||||||||||||| || |||| | ||||||| || |||||||||    
T  38939243 tgatatttctacaactatttttgtacaactttctctctcatactcacattatgtttttattcttt 38939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 20995096 - 20995045
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| |||| || |||| |||||||||||||||||||| ||||    
T  20995096 atttttgtacaaccttctctctcatacttacattatcttcttattctctctc 20995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 30462771 - 30462700
Alignment:
Q  200 tttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttct-cattgtttt 270  Q
    |||||||| | |||||| |||| |||| | || |||||| |||||||||||||||||||||| |||||||||    
T  30462771 tttgtacaacaatttttttacagctttttctctcatattcacattatcttcttattctttctccattgtttt 30462700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 37471660 - 37471727
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||   |||||||||||||||||| || | || | |||||||||||||||||| ||||    
T  37471660 tgatatttgtacaatcatttttgtacaactttctctctcgtactcacattatcttcttattctctctc 37471727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 23265408 - 23265346
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattct 257  Q
    ||||||||||| | |||||||| ||||||||| | || |||| | ||||||||||||||||||    
T  23265408 tgatatttgtataactatttttatacaactttttctctcatactcacattatcttcttattct 23265346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 22836175 - 22836126
Alignment:
Q  213 ttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    |||||||||||||||| || |||| | |||||||||||||||||| ||||    
T  22836175 ttttgtacaactttctctctcatactcacattatcttcttattctctctc 22836126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 17055 - 17122
Alignment:
Q  195 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttattctttctc 262  Q
    ||||||||||||| | |||||||||||||||| | || |||| |  ||||||||||||||||| ||||    
T  17055 tgatatttgtacaaccatttttgtacaactttatctctcatactcgcattatcttcttattctctctc 17122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 48687 - 48747
Alignment:
Q  211 atttttgtacaactttctttcacatatttacattatcttcttattctttctcattgttttt 271  Q
    ||||||||||||| |||| || |||| | |||||||||||||||||| |||| || |||||    
T  48687 atttttgtacaaccttctctctcatactcacattatcttcttattctctctctttcttttt 48747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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