View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_high_10 (Length: 429)

Name: NF3155_high_10
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_high_10
NF3155_high_10
[»] chr2 (13 HSPs)
chr2 (1-349)||(2321602-2321972)
chr2 (1-169)||(2294287-2294464)
chr2 (328-420)||(2322015-2322107)
chr2 (74-143)||(2303977-2304046)
chr2 (189-309)||(2294512-2294633)
chr2 (189-259)||(2339306-2339375)
chr2 (331-420)||(2331566-2331653)
chr2 (189-226)||(2304241-2304278)
chr2 (189-261)||(2331412-2331484)
chr2 (67-172)||(2327562-2327664)
chr2 (389-420)||(2294657-2294688)
chr2 (1-47)||(2351476-2351522)
chr2 (1-46)||(2303900-2303945)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 2321602 - 2321972
Alignment:
Q  1 aaaaatccattgcaagttcttgtttctcctagggtatag---------gttatgtgtaacgatttggagtatgtaatgttgttgtgtgaaccactctaga 91  Q
    ||||||||||||||||||| | |||||||||||||||||         ||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  2321602 aaaaatccattgcaagttcatatttctcctagggtatagattatgtgtgttatgtgtaacgatttggagtatgtaatgttgt---gtgaaccactctaga 2321698  T
Q  92 ttctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtgggattttgtttcatacaat--------------acaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||              |||     
T  2321699 ttctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtcggattttgtttcatacaatgatcccttatgcatacat 2321798  T
Q  178 tgatc--ccttacttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgat 275  Q
    | ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321799 tcatatgccttacttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgat 2321898  T
Q  276 cttgtttttgtaatatcaaagttgttttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321899 cttgtttttgtaatatcaaagttgttttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa 2321972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2294287 - 2294464
Alignment:
Q  1 aaaaatccattgcaagttcttgtttctcctagggtataggttatgtgt---------aacgatttggagtatgtaatgttgttgtgtgaaccactctaga 91  Q
    ||||||||||||||||||| | ||||||||||| ||||| ||||||||         |||||| |||||||||||||||||||||||||||||| |||||    
T  2294287 aaaaatccattgcaagttcatatttctcctaggatatagattatgtgtgttatatgtaacgatgtggagtatgtaatgttgttgtgtgaaccaccctaga 2294386  T
Q  92 ttctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtgggattttgtttcata 169  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2294387 ttctctgcttgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcata 2294464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 328 - 420
Target Start/End: Original strand, 2322015 - 2322107
Alignment:
Q  328 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2322015 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 2322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 2303977 - 2304046
Alignment:
Q  74 tgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggattt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||||    
T  2303977 tgtgtgaaccactctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt 2304046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 2294512 - 2294633
Alignment:
Q  189 ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatc-ttgtttttgt 286  Q
    ||||||||||||||||||| ||||||||  ||||| | | |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| | ||    
T  2294512 ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctttgttgtagt 2294610  T
Q  287 aatatcaaagttgttttattttg 309  Q
    |||||  |||||| |||||||||    
T  2294611 aatattgaagttggtttattttg 2294633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 2339306 - 2339375
Alignment:
Q  189 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat 259  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  2339306 ttcttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaag-caagatactttcaat 2339375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 2331566 - 2331653
Alignment:
Q  331 aatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 420  Q
    |||||||||||||||| | ||  |||||||||||||||| | ||| | |||||||||||||||||| ||  |||||||||||||| ||||    
T  2331566 aatgtatgtcctagctgagac--ggaaattatgtttaggtttataatatctcatacaatatagattgtgcatcctccctaaacatttgtg 2331653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 2304241 - 2304278
Alignment:
Q  189 ttcttatatatcttgtttcttgtataaaataaaacatg 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304241 ttcttatatatcttgtttcttgtataaaataaaacatg 2304278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 2331412 - 2331484
Alignment:
Q  189 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgt 261  Q
    |||||| |||||||||||||| ||||||||||||||||  || | |||||| ||| |||||||| ||||||||    
T  2331412 ttcttacatatcttgtttcttatataaaataaaacatgcatgaccttcttgcaagccaagatacattcaatgt 2331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 2327562 - 2327664
Alignment:
Q  67 atgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcata-tggtgggattttgttt 165  Q
    ||||||||||||||||||  ||||||||||| ||||  |||||||||||   |||| |||||||||||||| ||||| ||| | ||||  ||||||| ||    
T  2327562 atgttgttgtgtgaaccatcctagattctct-cttggcaatgtcataac---acagcggaatattatatgtagatttgtcacattggtaagattttgctt 2327657  T
Q  166 catacaa 172  Q
    |||||||    
T  2327658 catacaa 2327664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 420
Target Start/End: Original strand, 2294657 - 2294688
Alignment:
Q  389 tatagattatgtttcctccctaaacatctgtg 420  Q
    ||||||||||||||||||||||||||||||||    
T  2294657 tatagattatgtttcctccctaaacatctgtg 2294688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2351476 - 2351522
Alignment:
Q  1 aaaaatccattgcaagttcttgtttctcctagggtataggttatgtg 47  Q
    ||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  2351476 aaaaatccattgcaagttcgtatttctcctaggatatagtttatgtg 2351522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2303900 - 2303945
Alignment:
Q  1 aaaaatccattgcaagttcttgtttctcctagggtataggttatgt 46  Q
    ||||||||||||||||||| | ||||||||||| ||||| ||||||    
T  2303900 aaaaatccattgcaagttcatatttctcctaggatatagattatgt 2303945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University