View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_high_12 (Length: 414)
Name: NF3155_high_12
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 41765366 - 41765749
Alignment:
| Q |
19 |
cagaggtctcgaatgcagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatc |
118 |
Q |
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| T |
41765366 |
cagaggtctcgaatgcagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagagggattcaagccagtaaaagatgtatc |
41765465 |
T |
|
| Q |
119 |
tattccagaaatcaatgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggctt |
218 |
Q |
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| T |
41765466 |
tattccagaaatcaatgttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggctt |
41765565 |
T |
|
| Q |
219 |
catggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgata |
318 |
Q |
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| T |
41765566 |
catggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgcta |
41765665 |
T |
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| Q |
319 |
tgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
402 |
Q |
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| T |
41765666 |
tgttgagaaaaagcaagttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41765749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 34 - 402
Target Start/End: Original strand, 41757298 - 41757666
Alignment:
| Q |
34 |
cagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatcaa |
133 |
Q |
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| T |
41757298 |
cagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaa |
41757397 |
T |
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| Q |
134 |
tgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattagg |
233 |
Q |
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| ||| |||||| | ||| ||| | || |||| || ||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| ||||| |
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| T |
41757398 |
tcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttagg |
41757497 |
T |
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| Q |
234 |
aatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagca |
333 |
Q |
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| T |
41757498 |
cctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagca |
41757597 |
T |
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| Q |
334 |
agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
402 |
Q |
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| T |
41757598 |
agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41757666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
280 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
376 |
Q |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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