View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_high_16 (Length: 329)

Name: NF3155_high_16
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_high_16
NF3155_high_16
[»] chr4 (2 HSPs)
chr4 (39-317)||(56539972-56540249)
chr4 (173-221)||(23992450-23992498)
[»] chr2 (2 HSPs)
chr2 (127-281)||(25124768-25124920)
chr2 (167-232)||(7768800-7768865)
[»] chr1 (2 HSPs)
chr1 (39-117)||(32791308-32791386)
chr1 (152-281)||(48183395-48183524)
[»] chr7 (3 HSPs)
chr7 (130-277)||(20266702-20266846)
chr7 (127-186)||(20249946-20250005)
chr7 (246-282)||(1483562-1483598)
[»] chr8 (4 HSPs)
chr8 (133-203)||(28940854-28940924)
chr8 (127-182)||(31164452-31164507)
chr8 (246-281)||(31166094-31166129)
chr8 (240-281)||(31164352-31164393)
[»] chr5 (1 HSPs)
chr5 (248-280)||(19365671-19365703)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 39 - 317
Target Start/End: Original strand, 56539972 - 56540249
Alignment:
Q  39 ggcaacaattataggcctatttccgcttttaaacttcctaatccttgcggcgacctcgaatccatctatatcaggcattcttctatccatctatttattc 138  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56539972 ggcaacaattataggcctatttccgcttttaaacttccgaatccttgcggcgacctcgaatccatctatatcaggcattcttctatccatctatttattc 56540071  T
Q  139 tctcctttttaagttataaacctatgaatttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagtaaacaaannnnnn 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  56540072 tctcctttttaagttataaacctatgaatttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagtaaacaaatttttt 56540171  T
Q  239 naaatgcaactcattcaaacatataacaaagaatttaaaaaacatgaaaaacagtgttgtttgtattttttctctctct 317  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  56540172 taaatgcaactcattcaaacatataacaaagaatttaaaaaacatgaaaaatagtgttgtttgta-tttttctctctct 56540249  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 23992498 - 23992450
Alignment:
Q  173 agtttatcattttagtagtgattcaagttcaaataataataagttttag 221  Q
    |||||||| ||||||||| || ||| ||||||||| |||||||||||||    
T  23992498 agtttatcgttttagtagcgactcatgttcaaatactaataagttttag 23992450  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 127 - 281
Target Start/End: Complemental strand, 25124920 - 25124768
Alignment:
Q  127 atctatttattctctcctttttaagttataaacctatgaatttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagta 226  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| |||||| ||||| ||| || ||||||||||||||||||||||||||||||||    
T  25124920 atctatttgttctctcctttttaa--tataaacctatgaatttgacaatttatcgttttaatagcgactcaagttcaaataataataagttttagcagta 25124823  T
Q  227 aacaaannnnnnnaaatgcaactcattcaaacatataacaaagaatttaaaaaac 281  Q
    |||||        |||| ||||||||||||  ||||||||||||||| |||||||    
T  25124822 aacaattttttttaaatacaactcattcaattatataacaaagaattaaaaaaac 25124768  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 7768865 - 7768800
Alignment:
Q  167 tttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagtaaacaaa 232  Q
    ||||| |||||||| ||||||||  || ||| ||||||||| ||||||||||||||| | ||||||    
T  7768865 tttgatagtttatcgttttagtaacgactcaggttcaaatactaataagttttagcaattaacaaa 7768800  T

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Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 32791386 - 32791308
Alignment:
Q  39 ggcaacaattataggcctatttccgcttttaaacttcctaatccttgcggcgacctcgaatccatctatatcaggcatt 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  32791386 ggcaacaattataggcctatttccgcttttaaacttccgaatccttgcggcgacttcgaatccatctatatcaggcatt 32791308  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 281
Target Start/End: Complemental strand, 48183524 - 48183395
Alignment:
Q  152 ttataaacctatgaatttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagtaaacaaannnnnnnaaatgcaactca 251  Q
    |||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||||        ||||  ||||||    
T  48183524 ttataagcctgtgaatttgacagtttaacattttagtagcgattcaagttcaaatactaataagttttagcaataaacaatttttttaaaatataactca 48183425  T
Q  252 ttcaaacatataacaaagaatttaaaaaac 281  Q
    || |||||||||||||||||||| ||||||    
T  48183424 tttaaacatataacaaagaatttcaaaaac 48183395  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 20266702 - 20266846
Alignment:
Q  130 tatttattctctcctttttaagttataaacctatgaatttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagtaaac 229  Q
    ||||||||||||||||||||  |||||||  | |||||||||| ||||||| ||||||||| |||||||||||||||| |||||| |||||  | |||||    
T  20266702 tatttattctctcctttttagtttataaa--tgtgaatttgacggtttatcgttttagtagcgattcaagttcaaatactaataaattttaataataaac 20266799  T
Q  230 aaannnnnnnaaatgcaactcattcaaacatataacaaagaatttaaa 277  Q
     ||       |||| ||||||||| |||||| ||||||||||||||||    
T  20266800 -aatttttttaaatacaactcatttaaacatgtaacaaagaatttaaa 20266846  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 20249946 - 20250005
Alignment:
Q  127 atctatttattctctcctttttaagttataaacctatgaatttgacagtttatcatttta 186  Q
    ||||||||||||||| |||||||  |||||||| | |||||||||||||||||| |||||    
T  20249946 atctatttattctcttctttttagtttataaacatgtgaatttgacagtttatcgtttta 20250005  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 1483562 - 1483598
Alignment:
Q  246 aactcattcaaacatataacaaagaatttaaaaaaca 282  Q
    ||||||||||||||||||| | |||||||||||||||    
T  1483562 aactcattcaaacatataatatagaatttaaaaaaca 1483598  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 28940924 - 28940854
Alignment:
Q  133 ttattctctcctttttaagttataaacctatgaatttgacagtttatcattttagtagtgattcaagttca 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||  | |||||||||    
T  28940924 ttattctctcctttttaatttataaacctatgaatttgacagtttatcgttttaatagcaactcaagttca 28940854  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 31164507 - 31164452
Alignment:
Q  127 atctatttattctctcctttttaagttataaacctatgaatttgacagtttatcat 182  Q
    |||||||||| ||||||||||||  |||||||||| ||||||||||||||||||||    
T  31164507 atctatttatcctctcctttttagtttataaacctgtgaatttgacagtttatcat 31164452  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 31166094 - 31166129
Alignment:
Q  246 aactcattcaaacatataacaaagaatttaaaaaac 281  Q
    ||||||||||||||||||||||||||||||||||||    
T  31166094 aactcattcaaacatataacaaagaatttaaaaaac 31166129  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 31164393 - 31164352
Alignment:
Q  240 aaatgcaactcattcaaacatataacaaagaatttaaaaaac 281  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  31164393 aaatacaactcattcaaacatataacaaataatttaaaaaac 31164352  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 19365671 - 19365703
Alignment:
Q  248 ctcattcaaacatataacaaagaatttaaaaaa 280  Q
    |||||||||||||| ||||||||||||||||||    
T  19365671 ctcattcaaacatacaacaaagaatttaaaaaa 19365703  T

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