View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_high_20 (Length: 308)
Name: NF3155_high_20
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 31955953 - 31956203
Alignment:
| Q |
1 |
tagttgtttctaagaaccgtttctctaacaaaaacaggtccagctcaatatgcttggtcctgacatgcaaaacgataagattgtgagtcaaagcaaatgc |
100 |
Q |
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| T |
31955953 |
tagttgtttctaagaaccgtttctctaacaaaaacaggtccagctcaatatgcttggtcctgacatgcaaaacgataagattgtgagtcaaagcaaatgc |
31956052 |
T |
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| Q |
101 |
actcatgttgtaacnnnnnnnctgttggagttagaaatggagctttaagcaactcagaagccacaagtgaccaaagccttgtttttattattcagc-ttt |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31956053 |
actcatgttgtaacaaaaaaactgttggagttagaaatggagctttaagcaactaagaagccacaagtgaccaaagccttgtttttattattcagctttt |
31956152 |
T |
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| Q |
200 |
gtcttacttctagagaccacatgttgcttttatccactaagagacccaatt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31956153 |
gtcttacttctagagaccacatgttgcttttatccactaagagacccaatt |
31956203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 31956218 - 31956273
Alignment:
| Q |
235 |
actaagagacccaattaatgaggtctagatgcacacaagcatcaaatgttaacctt |
290 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31956218 |
actaagagacccaattaataaggtctagatgcacacaagcatcaaatgttaacctt |
31956273 |
T |
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