View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_high_29 (Length: 257)
Name: NF3155_high_29
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39262177 - 39261940
Alignment:
| Q |
1 |
tcatacctaaatggtgaaggcaaaatacgcttcaattaactgagtgacttaatacttgataccaaacacaagctatatttaatnnnnnnnnnttattatg |
100 |
Q |
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| T |
39262177 |
tcatacctaaatggtgaaggcaaaatacgcttcaattaactgagtgacttaatacttgataccaaacacaagctatatttaataaaaaaaa-ttattatg |
39262079 |
T |
|
| Q |
101 |
tataacaaaagtaaatgttcgataattcccctgaacaataatgtataatacattagtacaaagaacgattatcatttcttaatatggaaaattcatttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39262078 |
tataacaaaagtaaatgttcgataattcccctgaacaataatgtataatacattagtacaaagaacgattatcatttcttaatatggaaaattcatgtgt |
39261979 |
T |
|
| Q |
201 |
ttattttagggtatgaaatgattgaaaggatggcatact |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39261978 |
ttattttagggtatgaaatgattgaaaggatggcatact |
39261940 |
T |
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