View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_high_38 (Length: 228)
Name: NF3155_high_38
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_high_38 |
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| [»] scaffold0236 (1 HSPs) |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 19967 - 20193
Alignment:
| Q |
1 |
tagttgcctgaacagagcataaaaacagaaaagaaactcttatcctatgcccaatatggtaaacttgtgtgatttaatgaggaacaaaaatttcagtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
19967 |
tagttgcctgaacagagcataaaaacagaaaagaaactcttagtctatgcc-aatatggtaaacttgtgtgatttaatgagggacaaaaatttcagcccc |
20065 |
T |
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| Q |
101 |
tgtcttgtctcttgcctctacgtttatcaattttacaataaaacaaaataaacagttgttttacccctccctcttagaacacttattaagaagactagag |
200 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20066 |
tgtcttgtctcttgcctccacgtttatcagttttacaataaaacaaaataaacagttgttttacccctcccccttagaacacttattaagaagactagag |
20165 |
T |
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| Q |
201 |
aagaaattttgtcttggaaatgatacat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20166 |
aagaaattttgtcttggaaatgatacat |
20193 |
T |
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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31706367 - 31706430
Alignment:
| Q |
1 |
tagttgcctgaacagagcataaaaacagaaaagaaactcttatcctatgcccaatatggtaaac |
64 |
Q |
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| T |
31706367 |
tagttgcctgaacaaagcataaaaacagaaaagaaactcttagcctatgcccaatatggtaaac |
31706430 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4741157 - 4741093
Alignment:
| Q |
1 |
tagttgcctgaacagagcataaaaa-cagaaaagaaactcttatcctatgcccaatatggtaaac |
64 |
Q |
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| T |
4741157 |
tagttgcctgaacagagcataaaaaacagaaaagaaactcttagcctatgcctaaaatggtaaac |
4741093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 44720854 - 44720890
Alignment:
| Q |
186 |
ttaagaagactagagaagaaattttgtcttggaaatg |
222 |
Q |
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| T |
44720854 |
ttaagaagtctagagaagaaattttgtcttgaaaatg |
44720890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9200878 - 9200923
Alignment:
| Q |
19 |
ataaaaacagaaaagaaactcttatcctatgcccaatatggtaaac |
64 |
Q |
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| T |
9200878 |
ataaaaacagaaaagaaactcttagcctatgtccaatatggtaaac |
9200923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 15259536 - 15259494
Alignment:
| Q |
22 |
aaaacagaaaagaaactcttatcctatgcccaatatggtaaac |
64 |
Q |
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| T |
15259536 |
aaaacagaaaagaaactcttagcctatgcccagtatggtaaac |
15259494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 10467136 - 10467176
Alignment:
| Q |
78 |
tgaggaacaaaaatttcagtttctgtcttgtctcttgcctc |
118 |
Q |
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| T |
10467136 |
tgaggaacaaaaatatcagtttttgtcttgtctcttgcctc |
10467176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 44814057 - 44814093
Alignment:
| Q |
186 |
ttaagaagactagagaagaaattttgtcttggaaatg |
222 |
Q |
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|||||||||||| |||||||||||||||||| ||||| |
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| T |
44814057 |
ttaagaagactaaagaagaaattttgtcttgaaaatg |
44814093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 33847488 - 33847525
Alignment:
| Q |
187 |
taagaagactagagaagaaattttgtcttggaaatgat |
224 |
Q |
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||||||||||| ||||||||| |||||||||||||||| |
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| T |
33847488 |
taagaagactaaagaagaaatgttgtcttggaaatgat |
33847525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 1667 - 1627
Alignment:
| Q |
78 |
tgaggaacaaaaatttcagtttctgtcttgtctcttgcctc |
118 |
Q |
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||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
1667 |
tgagggacaaaaatttcagtttttgtcttgtcccttgcctc |
1627 |
T |
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