View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_high_4 (Length: 570)

Name: NF3155_high_4
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_high_4
NF3155_high_4
[»] chr7 (2 HSPs)
chr7 (86-570)||(22585889-22586378)
chr7 (22-57)||(22585850-22585885)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 86 - 570
Target Start/End: Original strand, 22585889 - 22586378
Alignment:
Q  86 aaatctaacaagcatatgacaagttgatccaattcatgcaactaaacctaataaaattaccatgcaagttaacnnnnnnnt---gttgaagtgt--tctt 180  Q
    ||||||| |||||||||||  ||||| ||||||||||||||||||||||||| ||||||||||||||||||||       |   |||||||| |  ||||    
T  22585889 aaatctagcaagcatatgaagagttggtccaattcatgcaactaaacctaatgaaattaccatgcaagttaacaaaaaaataatgttgaagtatattctt 22585988  T
Q  181 accttgttgatgaaatttgttgaaattggttactatggttagtaactaacaaagcattttcaatatctgagatggtaggacctgaataaatatttgaaat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22585989 accttgttgatgaaatttgttgaaattggttactatggttagtaactaacaaagcattttcaatatctgaaatggtaggacctgaataaatatttgaaat 22586088  T
Q  281 gaacctattaaaagcttggtcttttgaagattcatgacttaaattggctacttcagatactctctcatgtggcaacataagaagaggagtctcatcaact 380  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22586089 gaacctattaaaagcttggtcttttgaagaatcatgacttaaattggctacttcagatactctctcatgtggcaacataagaagaggagactcatcaact 22586188  T
Q  381 aaaagctctcttaaaagttcatcattctctgaccaattagaagacattattttctccatcattgtctttgacatggatgagtcaatcatatttattatgc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22586189 aaaagctctcttaaaagttcatcattctctgaccaattagaagacattattttctccatcattgtctttgacatggatgagtcaatcatatttattaggc 22586288  T
Q  481 tttaaagagaaaatagtataattgaaatatgaatttaggtgaagtaaagatataataggctaatgagatatgaaagagtggagtagatat 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22586289 tttaaagagaaaatagtataattgaaatatgaatttaggtgaagtaaagatataataggctaatgagatatgaaagagtggagtagatat 22586378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 22585850 - 22585885
Alignment:
Q  22 atgaaagcatgaagcacaattacacacatcaaataa 57  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22585850 atgaaagcatgaaacacaattacacacatcaaataa 22585885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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