View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_low_1 (Length: 822)

Name: NF3155_low_1
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_low_1
NF3155_low_1
[»] chr1 (22 HSPs)
chr1 (18-780)||(6487717-6488495)
chr1 (684-769)||(526996-527081)
chr1 (684-767)||(26040972-26041055)
chr1 (94-235)||(8382229-8382370)
chr1 (684-769)||(39858347-39858432)
chr1 (684-769)||(46845753-46845838)
chr1 (711-772)||(1673366-1673427)
chr1 (698-771)||(1994951-1995024)
chr1 (711-771)||(27325752-27325812)
chr1 (97-234)||(31834820-31834959)
chr1 (686-770)||(44797565-44797649)
chr1 (688-765)||(29637311-29637388)
chr1 (696-769)||(49430573-49430646)
chr1 (711-769)||(2403049-2403107)
chr1 (684-766)||(15225088-15225170)
chr1 (688-770)||(32267566-32267648)
chr1 (684-738)||(40314123-40314177)
chr1 (688-769)||(40294832-40294913)
chr1 (684-768)||(13276561-13276645)
chr1 (689-767)||(7178213-7178291)
chr1 (713-743)||(34311347-34311377)
chr1 (690-735)||(19989273-19989318)
[»] chr4 (21 HSPs)
chr4 (684-771)||(5817477-5817564)
chr4 (684-766)||(51579323-51579405)
chr4 (684-771)||(20107108-20107196)
chr4 (686-769)||(37605790-37605873)
chr4 (686-769)||(55281208-55281291)
chr4 (697-771)||(17044001-17044075)
chr4 (684-769)||(25784005-25784090)
chr4 (697-768)||(25164581-25164652)
chr4 (698-769)||(32525133-32525204)
chr4 (684-770)||(24059230-24059316)
chr4 (687-769)||(43749092-43749174)
chr4 (711-769)||(45996018-45996076)
chr4 (684-769)||(42179234-42179319)
chr4 (684-769)||(50498210-50498295)
chr4 (699-767)||(48525328-48525396)
chr4 (723-774)||(39631274-39631325)
chr4 (686-772)||(22364560-22364646)
chr4 (696-770)||(51579580-51579653)
chr4 (704-768)||(32290215-32290279)
chr4 (684-764)||(41277220-41277300)
chr4 (696-765)||(36851231-36851300)
[»] chr8 (17 HSPs)
chr8 (685-761)||(8368469-8368545)
chr8 (684-772)||(45413635-45413723)
chr8 (684-773)||(28897991-28898080)
chr8 (686-768)||(43066003-43066085)
chr8 (684-769)||(2599531-2599616)
chr8 (684-764)||(41075694-41075774)
chr8 (690-768)||(27497174-27497251)
chr8 (697-770)||(1993750-1993823)
chr8 (684-769)||(10391402-10391487)
chr8 (687-767)||(11904855-11904935)
chr8 (684-764)||(31774729-31774809)
chr8 (711-769)||(14342313-14342371)
chr8 (689-741)||(16465714-16465766)
chr8 (149-232)||(42351740-42351823)
chr8 (637-675)||(5749069-5749107)
chr8 (689-743)||(45502688-45502742)
chr8 (712-769)||(4077086-4077143)
[»] chr3 (12 HSPs)
chr3 (684-768)||(23004757-23004841)
chr3 (685-769)||(8330690-8330774)
chr3 (686-769)||(50989203-50989286)
chr3 (686-769)||(51092335-51092418)
chr3 (688-765)||(33288136-33288213)
chr3 (697-766)||(38247801-38247870)
chr3 (687-774)||(9271105-9271192)
chr3 (686-768)||(12224102-12224184)
chr3 (696-761)||(54713532-54713597)
chr3 (718-769)||(29915090-29915141)
chr3 (718-769)||(29964243-29964294)
chr3 (686-772)||(48034908-48034994)
[»] chr6 (8 HSPs)
chr6 (686-763)||(29429590-29429667)
chr6 (697-772)||(14314096-14314171)
chr6 (684-769)||(23915972-23916057)
chr6 (686-766)||(1244655-1244735)
chr6 (711-769)||(9045833-9045891)
chr6 (717-769)||(34792781-34792833)
chr6 (713-771)||(9521943-9522001)
chr6 (690-763)||(12748217-12748290)
[»] chr2 (13 HSPs)
chr2 (696-769)||(4434699-4434772)
chr2 (687-769)||(32599348-32599430)
chr2 (684-769)||(3121610-3121695)
chr2 (697-768)||(13697075-13697146)
chr2 (699-770)||(14945848-14945919)
chr2 (684-766)||(36272758-36272840)
chr2 (684-769)||(33299979-33300064)
chr2 (684-771)||(5562934-5563021)
chr2 (686-768)||(42061330-42061412)
chr2 (684-769)||(24475798-24475883)
chr2 (698-770)||(40095262-40095334)
chr2 (711-769)||(14242639-14242697)
chr2 (699-740)||(25333173-25333214)
[»] chr5 (8 HSPs)
chr5 (686-769)||(13988247-13988330)
chr5 (686-769)||(36890377-36890460)
chr5 (684-769)||(15285329-15285414)
chr5 (687-743)||(12248299-12248355)
chr5 (711-770)||(11247191-11247250)
chr5 (696-766)||(1447856-1447926)
chr5 (637-675)||(20151478-20151516)
chr5 (689-767)||(43100310-43100388)
[»] chr7 (12 HSPs)
chr7 (684-771)||(31741041-31741128)
chr7 (711-770)||(46576366-46576425)
chr7 (697-770)||(48460658-48460731)
chr7 (688-740)||(43359001-43359053)
chr7 (684-771)||(38754992-38755079)
chr7 (684-767)||(42974475-42974558)
chr7 (684-762)||(11752604-11752682)
chr7 (687-767)||(28713679-28713759)
chr7 (687-767)||(38349559-38349639)
chr7 (637-675)||(38754937-38754975)
chr7 (625-670)||(33496608-33496653)
chr7 (696-769)||(47480122-47480194)


Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 780
Target Start/End: Complemental strand, 6488495 - 6487717
Alignment:
Q  18 actgttagcccactttatgaagaccaatcaagcattaaattcttaaaataaaaaataaacatatgatatggttatatagtatgtgtttggtttagggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488495 actgttagcccactttatgaagaccaatcaagcattaaattcttaaaataaaaaataaacatatgatatggttatatagtatgtgtttggtttagggatt 6488396  T
Q  118 tgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttcttgccaaagttttggc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488395 tgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttcttgccaaagttttggc 6488296  T
Q  218 ctgatgtgaaaatggcactgcatagttaaatataggcgcagtcatgttacataatataataaaccat------------ttttacattgattagaaatcg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||            |||||||||| ||||||||||    
T  6488295 ctgatgtgaaaatggcactgcatagttaaatataggcgcagtcatgttacataatgtaataaaccatacactaagatagttttacattggttagaaatcg 6488196  T
Q  306 acactaagcgtagtttataaaca-cattcacactcttcaatccaacaagatatcttttagaaagaatgaaatgataaaaactcacacaaggttcaaagcg 404  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  6488195 acactaagcgtagtttataaacaacattcatactcttcaattcaacgagacatcttttagaaagaacgaaatgataaaaactcacacaaggttcaaaacg 6488096  T
Q  405 cacaatacttaaaaaa-tgcactctagtgttgtgaagttgaggtcggaacttttgcgctagaatgcactctagtgttgtggagttaacctcgacgggagg 503  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6488095 cacaatacttaaaaaaatgcactctagtgttgtaaagttgaggtcggaacttttgcgctagaatgcactctagtgttgtggagt-aacctcgacgggagg 6487997  T
Q  504 ggtctattgtggtacacttaaatagttcaatcttgcttgagaatcgaatctaattatagtttataagcaacatacactcatcattcaaacaaggctaatg 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  6487996 ggtctattgtggtacacttaaatagttcaatcttgcttgagaatcgaatctaattatagtttataaacaacatacactcatcaatcaaacaaggataatg 6487897  T
Q  604 tttcattgacactcnnnnnnnccatatacacaatatacca--ccccatgtgagcgtgtgtgagagacaaaaaa--tannnnnnngtggggaccacgtgga 699  Q
    ||||| ||||||||       |||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||       ||||||||||||||||    
T  6487896 tttcactgacactc-ttttttccatatacacaatataccatcccccatatgagcgtgtgtgagagacaaaaaaattatttttttgtggggaccacgtgga 6487798  T
Q  700 cacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcattaagcaata 780  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  6487797 cacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatcactactcattaagcaata 6487717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 526996 - 527081
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||| |||  | ||||||||||||||||||    
T  526996 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 527081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 684 - 767
Target Start/End: Complemental strand, 26041055 - 26040972
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||  | || | |||||||||||    
T  26041055 gtggggaccacgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatcactac 26040972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 8382229 - 8382370
Alignment:
Q  94 tagtatgtgtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaac 193  Q
    ||||||||||||||||||| | ||| |||||| |||| || |||| ||||||||||||| |||||| | | |||| |||||  |||| ||||||| ||||    
T  8382229 tagtatgtgtttggtttagagttttccaatggctgccgcacgttttgaagcctttttgccgtgattcggaaaagctactatacgtagcttcactgcaaac 8382328  T
Q  194 gtgacttcttgccaaagttttggcctgatgtgaaaatggcac 235  Q
    |||| ||| ||||    ||||||| ||||||| |||||||||    
T  8382329 gtgagttcctgccgtgattttggcttgatgtggaaatggcac 8382370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 39858432 - 39858347
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||| ||||||| |||  | ||||||||||||||||||    
T  39858432 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactc 39858347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 46845753 - 46845838
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||  |||  | ||||||||||||||||||    
T  46845753 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 46845838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 772
Target Start/End: Complemental strand, 1673427 - 1673366
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 772  Q
    ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||||    
T  1673427 attgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactcatt 1673366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 698 - 771
Target Start/End: Complemental strand, 1995024 - 1994951
Alignment:
Q  698 gacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  1995024 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 1994951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 711 - 771
Target Start/End: Original strand, 27325752 - 27325812
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  27325752 attgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 27325812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 31834820 - 31834959
Alignment:
Q  97 tatgtgtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactattt--gtagtttcactggaaacg 194  Q
    |||||||||||||||| | |||||||||  || |||| |||| ||| ||||| | | |||||||||| |||| ||||| |  |||| |||| ||||||||    
T  31834820 tatgtgtttggtttagagttttgcaatgactgacacacgttttgaaacctttgttccgtgatttgaaaaagctactatatatgtagcttcattggaaacg 31834919  T
Q  195 tgacttcttgccaaagttttggcctgatgtgaaaatggca 234  Q
    ||| |||||| |   |||||| ||||||||||||||||||    
T  31834920 tgagttcttgtcgtggttttgacctgatgtgaaaatggca 31834959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 686 - 770
Target Start/End: Original strand, 44797565 - 44797649
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    |||||||||  |||||| | |||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||    
T  44797565 ggggaccacaaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 44797649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 765
Target Start/End: Original strand, 29637311 - 29637388
Alignment:
Q  688 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcact 765  Q
    |||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||    
T  29637311 ggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 29637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 696 - 769
Target Start/End: Original strand, 49430573 - 49430646
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||||||| ||||||| | |||||| |||||||||||||||| |||  | ||||||||||||| ||||    
T  49430573 tggacacatgtcacaattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatcaccactc 49430646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 2403049 - 2403107
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| ||||||||||||||||||||  |||  | ||||||||||||||||||    
T  2403049 attgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcactactc 2403107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 766
Target Start/End: Original strand, 15225088 - 15225170
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 766  Q
    |||||||||| ||||||| ||||||| ||||  ||||| |||| |||| ||||||||||| |||  | |||||||||||||||    
T  15225088 gtggggaccatgtggacatatgtcacaattgcatgtgggtgtataagttgtacatgccacctaaggtggtctatgtatcacta 15225170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 770
Target Start/End: Original strand, 32267566 - 32267648
Alignment:
Q  688 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    |||||||  |||||| |||||  ||||||||||| ||||||| | ||||||||||| |||  | |||||||||||||||||||    
T  32267566 ggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaattgtacatgccacttaagatggtctatgtatcactactca 32267648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 40314177 - 40314123
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacat 738  Q
    ||||||||||| |||||||||||||| ||||||| |||||||| || ||||||||    
T  40314177 gtggggaccacatggacacatgtcacaattgtgtatggatgtataaatggtacat 40314123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 40294832 - 40294913
Alignment:
Q  688 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||| | || ||||||||| ||||||| | | || ||||||||||| |||||| |||| | ||||||||||||||||||    
T  40294832 ggaccacatagatacatgtcacaattgtgtataggtggacaagtggtacgtgccacctaaagtggtctatgtatcactactc 40294913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 768
Target Start/End: Original strand, 13276561 - 13276645
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    ||||| ||||| |||||||||||||  ||||||| ||  |||| ||||||||||| |||| |||  | |||||||||||||||||    
T  13276561 gtgggtaccacatggacacatgtcataattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatcactact 13276645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 767
Target Start/End: Original strand, 7178213 - 7178291
Alignment:
Q  689 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    |||||| | ||||| |||||| ||||| ||||| ||||||| ||||||||| ||| |||  | ||||||||||||||||    
T  7178213 gaccacatagacacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatcactac 7178291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 743
Target Start/End: Original strand, 34311347 - 34311377
Alignment:
Q  713 tgtgtgtggatgtacaagtggtacatgccac 743  Q
    |||||||||||||||||||||||||||||||    
T  34311347 tgtgtgtggatgtacaagtggtacatgccac 34311377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 735
Target Start/End: Complemental strand, 19989318 - 19989273
Alignment:
Q  690 accacgtggacacatgtcaccattgtgtgtggatgtacaagtggta 735  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||    
T  19989318 accacatggacacatgtcacacttgtatgtggatgtacaagtggta 19989273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 684 - 771
Target Start/End: Original strand, 5817477 - 5817564
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  5817477 gtggggaccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactcat 5817564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 684 - 766
Target Start/End: Complemental strand, 51579405 - 51579323
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 766  Q
    ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| |||  | |||||||||||||||    
T  51579405 gtgggaaccacatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51579323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 684 - 771
Target Start/End: Complemental strand, 20107196 - 20107108
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtgga-tgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||| ||||| |||||||||||||| |||||||| ||  ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  20107196 gtgggaaccacatggacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 20107108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 769
Target Start/End: Original strand, 37605790 - 37605873
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  37605790 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 37605873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 769
Target Start/End: Complemental strand, 55281291 - 55281208
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  55281291 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 55281208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 697 - 771
Target Start/End: Complemental strand, 17044075 - 17044001
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  17044075 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 17044001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 25784005 - 25784090
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||| || || | ||||||||| ||| ||||||||||||||||||||||||||||| |||  |  |||||||||||||||||    
T  25784005 gtggggactacatgaatacatgtcacaattatgtgtggatgtacaagtggtacatgccacctaagatgatctatgtatcactactc 25784090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 697 - 768
Target Start/End: Original strand, 25164581 - 25164652
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||    
T  25164581 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 25164652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 698 - 769
Target Start/End: Original strand, 32525133 - 32525204
Alignment:
Q  698 gacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||| |||| |||||||||||||||| |||||||| ||||||| |||  | ||||||||||||||||||    
T  32525133 gacacatatcacaattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatcactactc 32525204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 770
Target Start/End: Original strand, 24059230 - 24059316
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    ||||| ||||| |||||||||||||| ||||| ||||| ||||||| || |||||||||  |||  | |||||||||||||||||||    
T  24059230 gtgggaaccacatggacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatcactactca 24059316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 769
Target Start/End: Complemental strand, 43749174 - 43749092
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||  |||||| |||||  ||| ||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  43749174 gggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 43749092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 45996018 - 45996076
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  45996018 attgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactc 45996076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 42179234 - 42179319
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||  ||| |||| ||||||||||| |||| |||  | |||||||||||| |||||    
T  42179234 gtggggaccacatggacacatgtcacaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatcattactc 42179319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 50498295 - 50498210
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||| | || |||  |  |||||||||||||||||    
T  50498295 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatactacctaaggtgatctatgtatcactactc 50498210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 699 - 767
Target Start/End: Complemental strand, 48525396 - 48525328
Alignment:
Q  699 acacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    ||||||||||| ||| | ||||||||||||||||||| ||||||| |||| | || |||||||||||||    
T  48525396 acacatgtcacaattatatgtggatgtacaagtggtatatgccacctaaagtggtttatgtatcactac 48525328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 723 - 774
Target Start/End: Original strand, 39631274 - 39631325
Alignment:
Q  723 tgtacaagtggtacatgccacataaattagtctatgtatcactactcattaa 774  Q
    ||||||||||||||||||||| |||  | |||||||||||||||||||||||    
T  39631274 tgtacaagtggtacatgccacctaaggtggtctatgtatcactactcattaa 39631325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 772
Target Start/End: Original strand, 22364560 - 22364646
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 772  Q
    ||||||||| ||||||||| |||| ||||| | ||| |||| |||||||| ||||||| ||| ||  | ||||||||||||||||||    
T  22364560 ggggaccacatggacacatatcacaattgtatatgggtgtataagtggtatatgccacctaagttgatttatgtatcactactcatt 22364646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 770
Target Start/End: Complemental strand, 51579653 - 51579580
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    |||||||||||||| ||||| | ||| ||||||||||||||||||||| |||  | |||| ||||||||||||||    
T  51579653 tggacacatgtcacaattgtatttgggtgtacaagtggtacatgccacctaaggtggtct-tgtatcactactca 51579580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 768
Target Start/End: Complemental strand, 32290279 - 32290215
Alignment:
Q  704 tgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    |||||| ||||||| ||| |||| |||||||||||||||| |||  | |||||||||||||||||    
T  32290279 tgtcacaattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatcactact 32290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 764
Target Start/End: Complemental strand, 41277300 - 41277220
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcac 764  Q
    ||||||||||| || ||||||||||| ||||| ||||| |||||| |||||||||| ||| |||  |  ||||||||||||    
T  41277300 gtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatcac 41277220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 765
Target Start/End: Complemental strand, 36851300 - 36851231
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcact 765  Q
    |||||||||||||| ||  || |||| ||||||||||||||||||||| |||  | ||||||| ||||||    
T  36851300 tggacacatgtcacaatcatgcgtgggtgtacaagtggtacatgccacttaaggtggtctatgcatcact 36851231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 685 - 761
Target Start/End: Original strand, 8368469 - 8368545
Alignment:
Q  685 tggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtat 761  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||  | ||||||||||    
T  8368469 tggggaccacgtggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 684 - 772
Target Start/End: Original strand, 45413635 - 45413723
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 772  Q
    ||||||||||  |||||||||||||| ||||||| |||||||| |||||||||||||||| |||  | |||||||||||||||||||||    
T  45413635 gtggggaccatatggacacatgtcacaattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatcactactcatt 45413723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 684 - 773
Target Start/End: Complemental strand, 28898080 - 28897991
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatta 773  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||| ||||||| |||  | ||||||||||||||||||||||    
T  28898080 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactcatta 28897991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 686 - 768
Target Start/End: Original strand, 43066003 - 43066085
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    |||||||||  |||||| |||||  ||||||||||||||||||||||||||||||||| |||  | |||||||||||||||||    
T  43066003 ggggaccacaaggacacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactact 43066085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 2599616 - 2599531
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| || ||||||||||| ||||||| ||| |||| |||||||||||||||| |||  | ||||||||||||||||||    
T  2599616 gtggggaccacatgaacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 2599531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 684 - 764
Target Start/End: Original strand, 41075694 - 41075774
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcac 764  Q
    ||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||||| ||| |||  | |||||||||||||    
T  41075694 gtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 768
Target Start/End: Complemental strand, 27497251 - 27497174
Alignment:
Q  690 accacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    ||||| || ||||||||| | ||||| ||||||||||||||||||||||||||| |||| | |||| ||||||||||||    
T  27497251 accacatgaacacatgtcgcaattgtctgtggatgtacaagtggtacatgccacctaaagtggtct-tgtatcactact 27497174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 697 - 770
Target Start/End: Original strand, 1993750 - 1993823
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    |||||| |||||  ||||||||||| |||||||||| |||||||||| |||  | |||||||||||||||||||    
T  1993750 ggacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactca 1993823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 10391402 - 10391487
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||| ||||||||| |||  |  ||||||||||| |||||    
T  10391402 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggcacatgccacctaagatgatctatgtatcattactc 10391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 767
Target Start/End: Complemental strand, 11904935 - 11904855
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    |||||||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||  | || |||||||||||||    
T  11904935 gggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactac 11904855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 764
Target Start/End: Complemental strand, 31774809 - 31774729
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcac 764  Q
    ||||||||||| || ||||||||||| ||||| ||||  ||||||||||||||||| ||| |||  | |||||||||||||    
T  31774809 gtggggaccacatgaacacatgtcacaattgtatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 31774729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 14342313 - 14342371
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||| |||||||||||||||| |||  | ||||||||||||||||||    
T  14342313 attgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 14342371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 741
Target Start/End: Original strand, 16465714 - 16465766
Alignment:
Q  689 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgcc 741  Q
    |||||||| |||||||||||| ||||| ||||| | |||||||||||||||||    
T  16465714 gaccacgtagacacatgtcacaattgtatgtgggtatacaagtggtacatgcc 16465766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 42351740 - 42351823
Alignment:
Q  149 ttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttcttgccaaagttttggcctgatgtgaaaatgg 232  Q
    |||| |||||||||| |||| ||||| ||||| ||||||| |||||||| ||| ||||    ||||||| ||||||||||||||    
T  42351740 ttgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaattcctgccgtgattttggcttgatgtgaaaatgg 42351823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 675
Target Start/End: Original strand, 5749069 - 5749107
Alignment:
Q  637 tataccaccccatgtgagcgtgtgtgagagacaaaaaat 675  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  5749069 tataccaccccatgtgagagtgtgtgagagacaataaat 5749107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 743
Target Start/End: Complemental strand, 45502742 - 45502688
Alignment:
Q  689 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccac 743  Q
    |||||| |||||||||||||| ||||| | || ||||||||||||||||| ||||    
T  45502742 gaccacatggacacatgtcacaattgtatatgaatgtacaagtggtacataccac 45502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 769
Target Start/End: Original strand, 4077086 - 4077143
Alignment:
Q  712 ttgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||| | ||||||||||||||||||| |||  | |||||| |||||||||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatcactactc 4077143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 684 - 768
Target Start/End: Complemental strand, 23004841 - 23004757
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    ||||||||||| || | ||||||||| ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||    
T  23004841 gtggggaccacatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 23004757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 685 - 769
Target Start/End: Original strand, 8330690 - 8330774
Alignment:
Q  685 tggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||| |||||| || |||| |||||||||| |||||||||||||||||||||  |||  | ||||||||||||||||||    
T  8330690 tggggaccacatggacatatatcacaattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatcactactc 8330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 769
Target Start/End: Complemental strand, 50989286 - 50989203
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  50989286 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 50989203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 769
Target Start/End: Complemental strand, 51092418 - 51092335
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  51092418 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 51092335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 765
Target Start/End: Complemental strand, 33288213 - 33288136
Alignment:
Q  688 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcact 765  Q
    ||||||| | ||||||| |||| ||||||||||| |||||||||||||||| |||| |||  | ||||||||||||||    
T  33288213 ggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 697 - 766
Target Start/End: Complemental strand, 38247870 - 38247801
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 766  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||    
T  38247870 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 38247801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 687 - 774
Target Start/End: Complemental strand, 9271192 - 9271105
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcattaa 774  Q
    ||||||||  |||||| |||||  ||| ||||||| ||||||||||||||||||||  |||  | |||||||||||||||||| ||||    
T  9271192 gggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcactactctttaa 9271105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 768
Target Start/End: Original strand, 12224102 - 12224184
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||| ||||||||||||| |||  | || ||||||||||||||    
T  12224102 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatcactact 12224184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 761
Target Start/End: Complemental strand, 54713597 - 54713532
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtat 761  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||| |||  | ||||||||||    
T  54713597 tggacacatgtcataattatgtgtggatgttcaagtggtacatgccacctaacgtggtctatgtat 54713532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 718 - 769
Target Start/End: Original strand, 29915090 - 29915141
Alignment:
Q  718 gtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||| ||||||||||||| |||||||||||  | ||||||||||||||||||    
T  29915090 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatcactactc 29915141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 718 - 769
Target Start/End: Original strand, 29964243 - 29964294
Alignment:
Q  718 gtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||| ||||||||||||| |||||||||||  | ||||||||||||||||||    
T  29964243 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatcactactc 29964294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 772
Target Start/End: Original strand, 48034908 - 48034994
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 772  Q
    |||||||||  |||||| |||||  ||||| ||||| ||||||||||||||||| ||| |||  | || |||||||||| |||||||    
T  48034908 ggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatcaccactcatt 48034994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 686 - 763
Target Start/End: Complemental strand, 29429667 - 29429590
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatca 763  Q
    |||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||  |||||| |||||||    
T  29429667 ggggaccatgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 697 - 772
Target Start/End: Original strand, 14314096 - 14314171
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 772  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||||    
T  14314096 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcatt 14314171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 23916057 - 23915972
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||  |||  |  |||||||||||||||||    
T  23916057 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatcactactc 23915972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 686 - 766
Target Start/End: Original strand, 1244655 - 1244735
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 766  Q
    |||||||||  |||||| || ||  ||||||||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  1244655 ggggaccacaaggacacttgccaaaattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatcacta 1244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 769
Target Start/End: Complemental strand, 9045891 - 9045833
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||| |||||||||| |||  | ||||||||||||||||||    
T  9045891 attgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactc 9045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 717 - 769
Target Start/End: Original strand, 34792781 - 34792833
Alignment:
Q  717 tgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  34792781 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 34792833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 771
Target Start/End: Original strand, 9521943 - 9522001
Alignment:
Q  713 tgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||||||| ||||||||||||||||||||| |||  |  ||||||||| |||||||||    
T  9521943 tgtgtgtgggtgtacaagtggtacatgccacctaaggtgatctatgtattactactcat 9522001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 763
Target Start/End: Complemental strand, 12748290 - 12748217
Alignment:
Q  690 accacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatca 763  Q
    ||||| |||||| ||||||| ||| | ||||| ||||||||||||| ||||||| |||| | || |||||||||    
T  12748290 accacatggacagatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 696 - 769
Target Start/End: Original strand, 4434699 - 4434772
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||  | |||||| |||||||||||    
T  4434699 tggacacatgtcacaatagtgtgtggaagtacaagtggtacatgccacataaggtggtctatatatcactactc 4434772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 687 - 769
Target Start/End: Original strand, 32599348 - 32599430
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||  |||||| |||||  ||| ||||||||||||||||||||||||||||| |||  | ||||||||||||||||||    
T  32599348 gggaccacaaggacacttgtcaaaattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 32599430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 3121695 - 3121610
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||  |||| |||||||||||||||  |||  | ||||||||||||||||||    
T  3121695 gtggggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 3121610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 697 - 768
Target Start/End: Original strand, 13697075 - 13697146
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||    
T  13697075 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 13697146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 770
Target Start/End: Original strand, 14945848 - 14945919
Alignment:
Q  699 acacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    |||||||| ||  |||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||    
T  14945848 acacatgttacatttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 14945919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 766
Target Start/End: Original strand, 36272758 - 36272840
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 766  Q
    |||||||||||  |||||| |||||  ||||||||||| |||| |||||||||||||||| |||  | |||||||||||||||    
T  36272758 gtggggaccacaaggacacttgtcaaaattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 36272840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 33300064 - 33299979
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| || ||||||||||| ||||| | ||| |||| || ||||||||||||| |||  | ||||||||||||||||||    
T  33300064 gtggggaccacatgaacacatgtcacaattgtatatgggtgtataaatggtacatgccacttaaggtggtctatgtatcactactc 33299979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 771
Target Start/End: Complemental strand, 5563021 - 5562934
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    |||| |||||| | |||||||||||  ||| | | || ||||| || ||||||||||||| |||| ||||||||||||||||||||||    
T  5563021 gtggagaccacatcgacacatgtcaaaattatatatgaatgtataaatggtacatgccacctaaaatagtctatgtatcactactcat 5562934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 768
Target Start/End: Original strand, 42061330 - 42061412
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 768  Q
    |||||||||  |||||| |||||  ||||| ||||| |||||||||||||||||||||  ||| |  ||||||||||||||||    
T  42061330 ggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatcactact 42061412  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 24475798 - 24475883
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||| || |||||||||||||| ||||||| ||| |||| ||||| ||||| |||| |||  | |||||||||||| |||||    
T  24475798 gtggggactacatggacacatgtcacaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatcattactc 24475883  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 770
Target Start/End: Complemental strand, 40095334 - 40095262
Alignment:
Q  698 gacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    ||||| |||||  ||||| ||||||||||||||||||||||| ||  |||  | |||||||||||||||||||    
T  40095334 gacacttgtcaaaattgtatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatcactactca 40095262  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 14242639 - 14242697
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||| ||||||||| |||| |||  | ||||||||||||||||||    
T  14242639 attgtgtgtgggtgtacaggtggtacataccacctaagatggtctatgtatcactactc 14242697  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 25333214 - 25333173
Alignment:
Q  699 acacatgtcaccattgtgtgtggatgtacaagtggtacatgc 740  Q
    ||||||||||| | ||||||| ||||||||||||||||||||    
T  25333214 acacatgtcacaaatgtgtgttgatgtacaagtggtacatgc 25333173  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 769
Target Start/End: Complemental strand, 13988330 - 13988247
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  13988330 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 13988247  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 769
Target Start/End: Complemental strand, 36890460 - 36890377
Alignment:
Q  686 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  36890460 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 36890377  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 684 - 769
Target Start/End: Complemental strand, 15285414 - 15285329
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    ||||||||||| |||||||||||||| ||||||| ||  |||| |||||||||||||||  |||  | ||||||||||||||||||    
T  15285414 gtggggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 15285329  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 743
Target Start/End: Complemental strand, 12248355 - 12248299
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccac 743  Q
    |||||||| |||||||||||||| ||| | ||||||||||||||||||| |||||||    
T  12248355 gggaccacatggacacatgtcacaattatatgtggatgtacaagtggtatatgccac 12248299  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 711 - 770
Target Start/End: Complemental strand, 11247250 - 11247191
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    ||||||||||||||||||||| ||| ||||||  |||  |||||||||||||||||||||    
T  11247250 attgtgtgtggatgtacaagtagtatatgccatctaaggtagtctatgtatcactactca 11247191  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 766
Target Start/End: Original strand, 1447856 - 1447926
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 766  Q
    |||||| ||||||| |||||| ||||||||| |||||||||||||||| |||| | |||||| ||| ||||    
T  1447856 tggacatatgtcacaattgtgcgtggatgtataagtggtacatgccacctaaagttgtctatatataacta 1447926  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 675
Target Start/End: Complemental strand, 20151516 - 20151478
Alignment:
Q  637 tataccaccccatgtgagcgtgtgtgagagacaaaaaat 675  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  20151516 tataccaccccatgtgagagtgtgtgagagacaataaat 20151478  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 767
Target Start/End: Original strand, 43100310 - 43100388
Alignment:
Q  689 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    |||||| |||||||||||||| ||| | ||||| ||||||||||||| || |||| |||  | || |||||||||||||    
T  43100310 gaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatataccacctaagatggtttatgtatcactac 43100388  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 684 - 771
Target Start/End: Complemental strand, 31741128 - 31741041
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||||| ||| | |||||||||||| ||||||| ||| |||| |||||||||||||||| |||  | |||||||||||| |||||||    
T  31741128 gtggggagcacatagacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcattactcat 31741041  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 711 - 770
Target Start/End: Original strand, 46576366 - 46576425
Alignment:
Q  711 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||    
T  46576366 attgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 46576425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 697 - 770
Target Start/End: Complemental strand, 48460731 - 48460658
Alignment:
Q  697 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 770  Q
    |||||| |||||  ||||| ||||||||||||| ||||||||||||| |||  | |||||||||||||||||||    
T  48460731 ggacacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatcactactca 48460658  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 740
Target Start/End: Complemental strand, 43359053 - 43359001
Alignment:
Q  688 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgc 740  Q
    ||||||||||||||| |||||| |||||| |||||||||||||| ||||||||    
T  43359053 ggaccacgtggacacgtgtcacaattgtgagtggatgtacaagtagtacatgc 43359001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 771
Target Start/End: Original strand, 38754992 - 38755079
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 771  Q
    ||||||| ||| |||||||||||||  ||| ||| ||| ||| ||||||||||||||||| |||  | |||||||||||| |||||||    
T  38754992 gtggggatcacatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatcattactcat 38755079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 767
Target Start/End: Original strand, 42974475 - 42974558
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    ||||||||||  || ||||||||||| ||||| ||||| |||| |||||||||||||||| |||  | || |||||||||||||    
T  42974475 gtggggaccatatgaacacatgtcacaattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatcactac 42974558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 762
Target Start/End: Complemental strand, 11752682 - 11752604
Alignment:
Q  684 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatc 762  Q
    |||||||||||||| ||||||||||| ||| | ||| | |||||||||| |||||||||| |||  | |||||||||||    
T  11752682 gtggggaccacgtgaacacatgtcacaattatatgtaggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 767
Target Start/End: Complemental strand, 28713759 - 28713679
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    |||| ||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||  | || |||||||||||||    
T  28713759 gggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactac 28713679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 767
Target Start/End: Original strand, 38349559 - 38349639
Alignment:
Q  687 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 767  Q
    |||| ||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||  | || |||||||||||||    
T  38349559 gggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagatggtttatgtatcactac 38349639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 675
Target Start/End: Original strand, 38754937 - 38754975
Alignment:
Q  637 tataccaccccatgtgagcgtgtgtgagagacaaaaaat 675  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  38754937 tataccaccccatgtgagagtgtgtgagagacaataaat 38754975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 670
Target Start/End: Complemental strand, 33496653 - 33496608
Alignment:
Q  625 ccatatacacaatataccaccccatgtgagcgtgtgtgagagacaa 670  Q
    ||||| ||||| |||||||| ||||||||| |||||||||||||||    
T  33496653 ccatacacacattataccactccatgtgagagtgtgtgagagacaa 33496608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 769
Target Start/End: Original strand, 47480122 - 47480194
Alignment:
Q  696 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 769  Q
    |||||||||||||| ||||| | ||| ||||||| ||||||||||||| |||  | |||||||||||| |||||    
T  47480122 tggacacatgtcacaattgtat-tgggtgtacaaatggtacatgccacctaaggtggtctatgtatcattactc 47480194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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