View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_10 (Length: 444)
Name: NF3155_low_10
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 55696431 - 55696845
Alignment:
| Q |
11 |
tgtattattaatattttatccatataaacatttgaccaagatcaataaaattacatcccttgactactttccaaaacagaactttgacaactttctcaaa |
110 |
Q |
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| T |
55696431 |
tgtattattaatattttatccatataaacatttgaccaagatcaataaaattacatcccttgactactttccaaaacagaactttgataactttctcaaa |
55696530 |
T |
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| Q |
111 |
gtatccaactagaggacaacagatgggatgctcctatagtctgtacaaagctgcagaacaataattctatgtgcagtcaaatcaaaaccagtttctttcc |
210 |
Q |
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| T |
55696531 |
gtatccaactagaggacaacagatgggatgctcctatagtctgtacaaagctgcagaacgataattctatgtgcagtcaaatcaaaaccagtttctttcc |
55696630 |
T |
|
| Q |
211 |
agattgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatgactttaagtcgagcttgcatgacaggcatagatgaataagct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55696631 |
agattgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatgactttaagacgagcttgcatgacaggcatagatgaataagct |
55696730 |
T |
|
| Q |
311 |
gggaaacacagccgacaaaagcatgtatgagatgaaggaaaacgatccccagattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagc |
410 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696731 |
gggaaacacagccgataaaagcatgtatgagatgaaggaagacgatcaccggattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagc |
55696830 |
T |
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| Q |
411 |
cttcaactggtaaat |
425 |
Q |
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| T |
55696831 |
cttcaactggtaaat |
55696845 |
T |
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