View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3155_low_11 (Length: 441)
Name: NF3155_low_11
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 48592071 - 48592493
Alignment:
| Q |
6 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592071 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48592170 |
T |
|
| Q |
106 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592171 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48592270 |
T |
|
| Q |
206 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592271 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
48592370 |
T |
|
| Q |
306 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48592371 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcacacaagctttg |
48592470 |
T |
|
| Q |
406 |
ataaagctttccaacaacataat |
428 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48592471 |
ataaagctttccaacaacataat |
48592493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 48601766 - 48602188
Alignment:
| Q |
6 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601766 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48601865 |
T |
|
| Q |
106 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601866 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48601965 |
T |
|
| Q |
206 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601966 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
48602065 |
T |
|
| Q |
306 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48602066 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcacacaagctttg |
48602165 |
T |
|
| Q |
406 |
ataaagctttccaacaacataat |
428 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48602166 |
ataaagctttccaacaacataat |
48602188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 23232261 - 23231839
Alignment:
| Q |
6 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
105 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| ||||| ||| ||||||| || | |||||| ||| | |||||||||||||||||||| ||| | |
|
|
| T |
23232261 |
tggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttatatcccttcgacttggctctgctcga |
23232162 |
T |
|
| Q |
106 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23232161 |
tttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
23232062 |
T |
|
| Q |
206 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
23232061 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaaccgaaccattgg |
23231962 |
T |
|
| Q |
306 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
405 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
23231961 |
gcaattcctaccgattcgaacccaagaactcgatgaattcattcaaacattgacaaataaatctaaggccagagaaagtttgaacctcacacaagctttg |
23231862 |
T |
|
| Q |
406 |
ataaagctttccaacaacataat |
428 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23231861 |
ataaagctttccaacaacataat |
23231839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 23224924 - 23224506
Alignment:
| Q |
10 |
catcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaattta |
109 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||| ||||||| |||| |||||| || | ||||||||||||||||| || || ||||| |
|
|
| T |
23224924 |
catcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatatggaccccttatatcccttcgacttggttctgttccattta |
23224825 |
T |
|
| Q |
110 |
tcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgccta |
209 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||||| ||||||||||| ||| ||||||||| ||||| ||| |
|
|
| T |
23224824 |
tcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttattcttcccgtaaaatgaacattgccatcaacacagttgtcta |
23224725 |
T |
|
| Q |
210 |
tgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggcacaa |
309 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| | ||||||||||| || |||||||| || ||| ||||||||| || || || || || | |||| |
|
|
| T |
23224724 |
cgatgatgctacttttgcttttgccccttatggggcatattggaaattcatcaaaaagcttagtacctttgagctcttaggcaaccggactattggacaa |
23224625 |
T |
|
| Q |
310 |
tttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttgataa |
409 |
Q |
| |
|
|| |||| |||||||| | ||||||| | || |||||||||||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||| | | |
|
|
| T |
23224624 |
ttcttaccaattcgaactcgagaactcaacgagttcattcaaactttggaaaataaatccaaggttgaagaaagcgtgaacctcactcaagctttgttga |
23224525 |
T |
|
| Q |
410 |
agctttccaacaacataat |
428 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23224524 |
agctttccaacaacataat |
23224506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University