View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_low_12 (Length: 440)

Name: NF3155_low_12
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_low_12
NF3155_low_12
[»] chr4 (8 HSPs)
chr4 (132-333)||(49522764-49522963)
chr4 (19-111)||(49522952-49523044)
chr4 (354-424)||(49522697-49522767)
chr4 (134-235)||(49530340-49530440)
chr4 (49-107)||(49502946-49503004)
chr4 (49-107)||(49509011-49509069)
chr4 (236-281)||(24915661-24915706)
chr4 (303-343)||(29961308-29961348)
[»] chr6 (1 HSPs)
chr6 (236-281)||(21013928-21013973)
[»] chr5 (1 HSPs)
chr5 (236-281)||(34766609-34766654)
[»] chr3 (1 HSPs)
chr3 (303-367)||(388943-389007)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 132 - 333
Target Start/End: Complemental strand, 49522963 - 49522764
Alignment:
Q  132 tacacgatgtaattattacgtacatacatttacaatttatattaaaaaagaaggattgatgaatttgaaaataaattagtgcctctagagcttgcgtaca 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  49522963 tacacgatgtaattattacgtacatacatttacaatttatattgaaaaagaaggattcatgaattttaaaataaattagtgcctctagagcttgcgtaca 49522864  T
Q  232 atttatgtgaagttgaaatatactttattttgctttaaaattattaaaaagataatnnnnnnncaagtgggatttgtttgagagagggagagtaactaac 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||  |||||||||||||    
T  49522863 atttatgtgaagttgaaatatactttattttgctttaaaattattaaaaagataacaaaaaaacaactgggatttgtttgagaga--gagagtaactaac 49522766  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 49523044 - 49522952
Alignment:
Q  19 caatctgactcacaactcataagtaaccattcaagagtgagaagagagactcttgatttgtgtttgcaaaataacgaaaattacacgatgtaa 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  49523044 caatcagactcacaactcataagtaaccattcaagagtgagaagagaaactcttgatttctgtttgcaaaataacgaagattacacgatgtaa 49522952  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 49522767 - 49522697
Alignment:
Q  354 acaacacgttaaatcaagcccatcgagcccaatgtatataagatgaaggccaaggacaaccgcccttttgt 424  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  49522767 acaacacgttaaatcaagcccatcgaacccaatgcatataagatgaagcccaaggacaaccgcccttttgt 49522697  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 49530440 - 49530340
Alignment:
Q  134 cacgatgtaattattacgtacatacatttacaatttatattaaaaaagaaggattgatgaatttgaaaataaattagtgcctctagagcttgcgtacaat 233  Q
    ||||||||||||||||  |||||||||||| |||||||||||||| | ||||||||||  ||||  | | ||||||||||||||||||| ||| | ||||    
T  49530440 cacgatgtaattattagatacatacatttaaaatttatattaaaataaaaggattgatacatttttaca-aaattagtgcctctagagcatgcatgcaat 49530342  T
Q  234 tt 235  Q
    ||    
T  49530341 tt 49530340  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 49503004 - 49502946
Alignment:
Q  49 tcaagagtgagaagagagactcttgatttgtgtttgcaaaataacgaaaattacacgat 107  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||||| || ||||||||||    
T  49503004 tcaagagtgagaagagaaacttttgctttgtgtttgcagaataacaaagattacacgat 49502946  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 49509069 - 49509011
Alignment:
Q  49 tcaagagtgagaagagagactcttgatttgtgtttgcaaaataacgaaaattacacgat 107  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||||| || ||||||||||    
T  49509069 tcaagagtgagaagagaaacttttgctttgtgtttgcagaataacaaagattacacgat 49509011  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 24915661 - 24915706
Alignment:
Q  236 atgtgaagttgaaatatactttattttgctttaaaattattaaaaa 281  Q
    ||||||||||| ||||  ||||||||||||||| ||||||||||||    
T  24915661 atgtgaagttggaataatctttattttgctttacaattattaaaaa 24915706  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 29961348 - 29961308
Alignment:
Q  303 atttgtttgagagagggagagtaactaacaatcgtttgtta 343  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  29961348 atttgttggaaagagggagagtaactaacaattgtttgtta 29961308  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 21013973 - 21013928
Alignment:
Q  236 atgtgaagttgaaatatactttattttgctttaaaattattaaaaa 281  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||    
T  21013973 atgtgaagttgaaataatttttattttgctttacaattattaaaaa 21013928  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 34766609 - 34766654
Alignment:
Q  236 atgtgaagttgaaatatactttattttgctttaaaattattaaaaa 281  Q
    |||| ||||||||||||| |||||||||||||  ||||||||||||    
T  34766609 atgttaagttgaaatatattttattttgctttccaattattaaaaa 34766654  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 389007 - 388943
Alignment:
Q  303 atttgtttgagagagggagagtaactaacaatcgtttgttagacaagaaagacaacacgttaaat 367  Q
    |||||| ||||||| ||| ||||||||||||| |||||||| |  ||||||| ||||||| ||||    
T  389007 atttgtatgagagaaggatagtaactaacaattgtttgttacaagagaaagataacacgtcaaat 388943  T

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