View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_low_16 (Length: 373)

Name: NF3155_low_16
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_low_16
NF3155_low_16
[»] chr2 (12 HSPs)
chr2 (66-363)||(30482809-30483106)
chr2 (111-362)||(30475207-30475458)
chr2 (108-362)||(30468078-30468332)
chr2 (108-362)||(30424085-30424339)
chr2 (154-335)||(30394069-30394250)
chr2 (105-362)||(30436336-30436593)
chr2 (108-362)||(30430118-30430372)
chr2 (154-335)||(30383940-30384121)
chr2 (155-335)||(8380056-8380236)
chr2 (154-350)||(23784237-23784433)
chr2 (154-350)||(23767646-23767842)
chr2 (154-267)||(23796898-23797011)
[»] chr5 (1 HSPs)
chr5 (154-335)||(41628322-41628503)
[»] chr8 (4 HSPs)
chr8 (165-334)||(15846073-15846242)
chr8 (165-334)||(15860262-15860431)
chr8 (176-334)||(15852912-15853070)
chr8 (165-334)||(15866649-15866818)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 66 - 363
Target Start/End: Complemental strand, 30483106 - 30482809
Alignment:
Q  66 atcttttattggtaacacaaagtaataaaatgcacaatgtagtcttacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagctt 165  Q
    |||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30483106 atcttttattggtaacacaaagtagtaaaatgcacaatttattcttacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagctt 30483007  T
Q  166 gctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcca 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30483006 gctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcca 30482907  T
Q  266 tacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaacttttaaagaatattggtaacatcatctgtg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482906 tacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaacttttaaagaatattggtaacatcatctgtg 30482809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 111 - 362
Target Start/End: Complemental strand, 30475458 - 30475207
Alignment:
Q  111 tacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactac 210  Q
    |||||||| ||||||||| ||||||  |||| || || |  ||||||||||||||||||  ||||||||||||||||| || |||| |||||||||||||    
T  30475458 tacctccatccagggatgaaaacttgtatcataactttctttgtaagttcagcttgctcgatttgaagttgaaatattctttttccctcttcataactac 30475359  T
Q  211 ttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattccctccca 310  Q
    ||||||||||||||| || |||||||||||| ||||||||||||| | ||||||| ||||| | |||||||||||||||| |||| ||||||| ||||||    
T  30475358 ttccaaatgctgttctagaaataacatcactcgccaaattttgaaggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctccca 30475259  T
Q  311 tttcctaatcatatcattgcaacttttaaagaatattggtaacatcatctgt 362  Q
    |||  |||||| |||||  |||||||| ||||| ||||||||||| ||||||    
T  30475258 tttggtaatcaaatcatcacaacttttgaagaaaattggtaacatgatctgt 30475207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 108 - 362
Target Start/End: Complemental strand, 30468332 - 30468078
Alignment:
Q  108 tcttacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagcttgctccttttgaagttgaaatatttttattccttcttcataac 207  Q
    ||||||||||| |||||||| ||||||||||||| |||||    ||||||||||||||| ||  ||||||||||||||||| || |||| ||||||||||    
T  30468332 tcttacctccatccagggatataaactttcatcataattttagttgtaagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataac 30468233  T
Q  208 tacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattccctc 307  Q
    |||||||||| |||| ||||| |||||||||||| || |||||||||| | |||||||||| || |||||||||||||||||| | || ||||||  |||    
T  30468232 tacttccaaacgctgctcgagaaataacatcactggcaaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctc 30468133  T
Q  308 ccatttcctaatcatatcattgcaacttttaaagaatattggtaacatcatctgt 362  Q
    |||||| ||||||| ||||| |||||||||   ||||||||||||||| ||||||    
T  30468132 ccatttgctaatcagatcatcgcaacttttgtggaatattggtaacatgatctgt 30468078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 108 - 362
Target Start/End: Complemental strand, 30424339 - 30424085
Alignment:
Q  108 tcttacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagcttgctccttttgaagttgaaatatttttattccttcttcataac 207  Q
    ||||||||||| |||||||||||||||||| ||| || |  || ||||||||  ||||| ||  ||||||||||||||||| || |||| ||||||||||    
T  30424339 tcttacctccatccagggatgtaaactttcgtcataactgacattgtaagtttggcttgttcggtttgaagttgaaatattctttttccctcttcataac 30424240  T
Q  208 tacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattccctc 307  Q
    ||||||||||||| | ||||| |||||||||||| ||||||||||||| | |||||||||| || |||||||||||||||||| | |  ||||||  |||    
T  30424239 tacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtccatttcacatgatccatctgaagccaacattttctc 30424140  T
Q  308 ccatttcctaatcatatcattgcaacttttaaagaatattggtaacatcatctgt 362  Q
    |||||| ||||||| ||||| ||||||||| | | ||||||||||||| ||||||    
T  30424139 ccatttgctaatcagatcatcgcaacttttgaggtatattggtaacatgatctgt 30424085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 154 - 335
Target Start/End: Complemental strand, 30394250 - 30394069
Alignment:
Q  154 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 253  Q
    ||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||| || ||||||| |||| ||||||| |||||||| ||    
T  30394250 taagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaacgcagttcgagaaatagcatcacttgccaaattctg 30394151  T
Q  254 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaactt 335  Q
     | |||||||||||| || |||||||||||||||||| | || |||||| |||||||||| |||||||||||||||||||||    
T  30394150 cagggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaactt 30394069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 30436593 - 30436336
Alignment:
Q  105 tagtcttacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagcttgctccttttgaagttgaaatatttttattccttcttcat 204  Q
    |||||| ||||||| |||||||| |||||||||   | |||||    ||||||||||||||| ||  ||||||||||||||||| || |||| |||||||    
T  30436593 tagtctcacctccatccagggatataaactttctcgataatttttgttgtaagttcagcttgttcggtttgaagttgaaatattctttttccctcttcat 30436494  T
Q  205 aactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattcc 304  Q
    ||||||||||||| |||| ||||| ||||| |||||| ||||||||||||| | |||||||||| || |||||||||||||||||| | || ||||||      
T  30436493 aactacttccaaacgctgctcgagaaataagatcactggccaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacatttt 30436394  T
Q  305 ctcccatttcctaatcatatcattgcaacttttaaagaatattggtaacatcatctgt 362  Q
    ||||||||| ||||||| ||||| |||||||||   |||||||||||| || ||||||    
T  30436393 ctcccatttgctaatcaaatcatcgcaacttttgtggaatattggtaatatgatctgt 30436336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 108 - 362
Target Start/End: Complemental strand, 30430372 - 30430118
Alignment:
Q  108 tcttacctccaaccagggatgtaaactttcatcaaaatttccaatgtaagttcagcttgctccttttgaagttgaaatatttttattccttcttcataac 207  Q
    ||||||||||| |||||||||||||||||  ||| ||||  || ||||||||  ||||| ||  ||||||||||||||||| || |||| ||||||||||    
T  30430372 tcttacctccatccagggatgtaaacttttgtcataattgacattgtaagtttggcttgttcggtttgaagttgaaatattctttttccctcttcataac 30430273  T
Q  208 tacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattccctc 307  Q
    ||||||||||||| | ||||| ||||||||| || || |||||||||| | |||||||||| || |||||||||||||||||| | |  ||||||  |||    
T  30430272 tacttccaaatgcagctcgagaaataacatctcttgctaaattttgaaggaaaggccatacttccatttcacatgatccatctgaagccaacattttctc 30430173  T
Q  308 ccatttcctaatcatatcattgcaacttttaaagaatattggtaacatcatctgt 362  Q
    |||||| ||||||| ||||| ||| ||||| | | ||||||||||||| ||||||    
T  30430172 ccatttgctaatcagatcatcgcatcttttgaggtatattggtaacatgatctgt 30430118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 154 - 335
Target Start/End: Complemental strand, 30384121 - 30383940
Alignment:
Q  154 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 253  Q
    ||||||||||||||||  ||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||| |||| ||||||| |||||||||||    
T  30384121 taagttcagcttgctctctttgaagttgaaatattctttttccttcttcatagctacttccaaatgcggttcgagaaatagcatcacttgccaaattttg 30384022  T
Q  254 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaactt 335  Q
     | ||||||||||| ||| |||||||||||||||||| | || ||||||  |||||||||  |||||| |||||||||||||    
T  30384021 cagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaactt 30383940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 335
Target Start/End: Original strand, 8380056 - 8380236
Alignment:
Q  155 aagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttga 254  Q
    ||||||| |||||||  ||||||| | ||||||| || |||||||||| |||||||||||||||||  |||||| |||||||||||| | |||||| ||     
T  8380056 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 8380155  T
Q  255 atggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaactt 335  Q
    | |||||||||||  || ||||||| |||||||||| |||| ||| ||  ||||||||| |||||||||||| ||||||||    
T  8380156 agggaaggccatatgtctatttcacctgatccatctgatgacaacgttgactcccatttgctaatcatatcaatgcaactt 8380236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 23784237 - 23784433
Alignment:
Q  154 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 253  Q
    |||||||| |||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||  |  ||||| ||||||||||| | |||  | ||    
T  23784237 taagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataactacttccaaatgacgaacgagcgataacatcacttgtcaagctctg 23784336  T
Q  254 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaacttttaaagaatattggt 350  Q
    || |||||||||||| || |||||||||||||||| | | || ||||||   ||||| || ||||||| ||||||||| ||||| |||||| |||||    
T  23784337 aagggaaggccatacgtccatttcacatgatccatttgaagacaacattttttcccaattgctaatcaaatcattgcagcttttcaagaatgttggt 23784433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 350
Target Start/End: Complemental strand, 23767842 - 23767646
Alignment:
Q  154 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 253  Q
    |||||||| |||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||  |  ||||| ||||||||||| | |||  | ||    
T  23767842 taagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataactacttccaaatgacgaacgagcgataacatcacttgtcaagctctg 23767743  T
Q  254 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaacttttaaagaatattggt 350  Q
    || |||||||||||  || |||||| | ||||||| | | || ||| || | ||||| || ||||||| ||| ||||| ||||| |||||| |||||    
T  23767742 aagggaaggccatatgtctatttcagaggatccatttgaagacaacgtttcttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggt 23767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 267
Target Start/End: Complemental strand, 23797011 - 23796898
Alignment:
Q  154 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 253  Q
    |||||||| |||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||  |  ||||| ||||||||||| | |||  | ||    
T  23797011 taagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataactacttccaaatgacgaacgagcgataacatcacttgtcaagctctg 23796912  T
Q  254 aatggaaggccata 267  Q
    || |||||||||||    
T  23796911 aagggaaggccata 23796898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 154 - 335
Target Start/End: Original strand, 41628322 - 41628503
Alignment:
Q  154 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 253  Q
    ||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||| ||    
T  41628322 taagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctg 41628421  T
Q  254 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaactt 335  Q
    || ||||||||||| ||| ||||||||||||||||||   || |||||| |||||||||| ||||| | ||| |||||||||    
T  41628422 aagggaaggccatatatctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaactt 41628503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 334
Target Start/End: Original strand, 15846073 - 15846242
Alignment:
Q  165 tgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcc 264  Q
    |||| |||| |||||||||||||||||  ||||||| |||| || |||||||||||||||| || ||| |||||||  | |||||| |||| | ||||||    
T  15846073 tgcttctttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggcc 15846172  T
Q  265 atacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaact 334  Q
    | |||||||  ||||||| ||||||| |||| || | ||||| |||||| || ||||| |||||||||||    
T  15846173 aaacatcaagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact 15846242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 334
Target Start/End: Original strand, 15860262 - 15860431
Alignment:
Q  165 tgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcc 264  Q
    |||| |||| |||||||||||| |||| |||||||| | || || |||||||||||||| |||| ||| |||||||  |  ||||| |||| ||||||||    
T  15860262 tgcttctttagaagttgaaatagttttgttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggcc 15860361  T
Q  265 atacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaact 334  Q
    | |||||||| ||||||| ||||||| |||| || | ||||| |||||| || ||||| |||||||||||    
T  15860362 aaacatcaatctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact 15860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 15852912 - 15853070
Alignment:
Q  176 aagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggccatacatcaatt 275  Q
    ||||||||||| |||| |||||||| | || || |||||||||||||| |||| ||| |||||||  | |||||| |||| | ||||||| ||||||||     
T  15852912 aagttgaaatagttttgttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatc 15853011  T
Q  276 tcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaact 334  Q
    ||||||| ||||||| |||| || |  || | |||||| || ||||| |||||||||||    
T  15853012 tcacatgttccatctgatgacaataaaccattccatttgcttatcatttcattgcaact 15853070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 334
Target Start/End: Original strand, 15866649 - 15866818
Alignment:
Q  165 tgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcc 264  Q
    |||| |||| |||||||||||| ||||  ||||||| | || || ||||||||||| || |||| ||| |||||||  |  ||||| |||| | ||||||    
T  15866649 tgcttctttagaagttgaaatagtttttctccttctgcgtagctgcttccaaatgccgtccgagaaattacatcacaggtaaaattctgaaggaaaggcc 15866748  T
Q  265 atacatcaatttcacatgatccatctaatgataacattccctcccatttcctaatcatatcattgcaact 334  Q
    | |||||||  ||||||| ||||||| |||| || | | ||| |||||| |||||||| |||||||||||    
T  15866749 aaacatcaacctcacatgttccatctgatgacaatagttccttccatttactaatcatttcattgcaact 15866818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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