View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_17 (Length: 356)
Name: NF3155_low_17
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 48 - 337
Target Start/End: Original strand, 4357913 - 4358213
Alignment:
| Q |
48 |
cattagttctactaacaaaaactatgtgtcctacataaattaatcttctctcattaagcctttgagttcttctaatctgtcatcgacttagaagaatatg |
147 |
Q |
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| T |
4357913 |
cattagttctacaaacaaaaactatgtgtcctacataaattaatcttctctcattaagcctttgagttcttctaatctgtcatcgacttagaagaacatg |
4358012 |
T |
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| Q |
148 |
tataagcctaaatcacatgtttgtcaattttgactagcatgtactttatttttaggtgtaataaaatagtgtgtga-----------aattgcaaaccaa |
236 |
Q |
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| T |
4358013 |
tataagcctaaatcacatgtttgtcgattttgactagcatgtactttatttttaggtgtaataaaatagtgtgtgaaattgcaaattaattgcaaaccaa |
4358112 |
T |
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| Q |
237 |
gtctgtcctctattgatatccgactaaaatgtattaaattagtaatgtcaaagatgtatttcaagtttcaactcaagtgatattagtgatgcatttgata |
336 |
Q |
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| T |
4358113 |
gtctgtcctctattgatatccgactaaaatgtattaaattagtaacgtcaaagatgtatttcaagtttcaactcaagtgatattagtgatgcatttgata |
4358212 |
T |
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| Q |
337 |
a |
337 |
Q |
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| T |
4358213 |
a |
4358213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4357771 - 4357820
Alignment:
| Q |
1 |
aaagatagagataaaagtatacggtgtcatacatatcgtgtcccaatcatta |
52 |
Q |
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| T |
4357771 |
aaagatagagattaaagtatacggtgtcatac--atcgtgtcccaatcatta |
4357820 |
T |
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