View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_18 (Length: 346)
Name: NF3155_low_18
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 76 - 295
Target Start/End: Original strand, 22592457 - 22592676
Alignment:
| Q |
76 |
attcatattcactcgtatagtgaaaataattgctaattgagatgcttcgttccaaagaaatggaattaaagttaaaggaaaatttactagtgaaattaat |
175 |
Q |
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| T |
22592457 |
attcatattcactggtatagtgaaaataattgctaattgagatgcatcgttccaaagaaatggaattaaagttaaaagaaaatttaccaatgaaagtaat |
22592556 |
T |
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| Q |
176 |
tgccagttcactaaacataaatgaaaattaagtgaaaaggtaaaacaaaattttatatattgattctagagatgcaatagtgaaattagtgatcaacgag |
275 |
Q |
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| T |
22592557 |
tgctagttcactgaacagaaatgaaaatcaagtgaaaaggtaaaacaaaattttatatattgattttagagatgcaatagtgaaattagtgatgaacgag |
22592656 |
T |
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| Q |
276 |
tgtgtctttggaacatttga |
295 |
Q |
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| T |
22592657 |
tgtgtctttggaacatttga |
22592676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 22592398 - 22592429
Alignment:
| Q |
17 |
cactcctatcatcattgagttaatccaaagat |
48 |
Q |
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| T |
22592398 |
cactcctatcatcattgagttaatccaaagat |
22592429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 90 - 337
Target Start/End: Complemental strand, 31147065 - 31146805
Alignment:
| Q |
90 |
gtatagtgaaaataattgctaattgaga---------tgcttcgttccaaagaaatggaattaaagttaaaggaaaatttact------agtgaaattaa |
174 |
Q |
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| T |
31147065 |
gtatagtgaaaataattgctaattgagaatatagagatgcatcgttccaaagaaatggaaataaagttaaaggaaaatttagtttcaccagtgaaagtaa |
31146966 |
T |
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| Q |
175 |
ttgccagttcactaaacataaatgaaaattaagtgaaaaggtaaaacaaaattttatatattgattctagagatgcaatagtgaaattagtgatcaacga |
274 |
Q |
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| T |
31146965 |
ttgctagttcaatgaacagaaatgaaaattaagtgaaaaggtaaaacaaaattttatatatttattctagagatacaatagtgaaattagtgatcaacga |
31146866 |
T |
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| Q |
275 |
gtgtgtctttggaacatttgaaatgaatcaatcatatacggttagattttttggaattcatct |
337 |
Q |
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| T |
31146865 |
--gtgtctttggaacatttgaaatgaatcaatcatatacagttagattttctggaattcatct |
31146805 |
T |
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