View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3155_low_2 (Length: 600)

Name: NF3155_low_2
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3155_low_2
NF3155_low_2
[»] chr7 (33 HSPs)
chr7 (6-342)||(21714557-21714893)
chr7 (6-224)||(21772335-21772553)
chr7 (6-328)||(21788603-21788922)
chr7 (6-181)||(21726270-21726445)
chr7 (455-590)||(21772760-21772895)
chr7 (179-338)||(21786055-21786214)
chr7 (455-590)||(21726640-21726775)
chr7 (1-207)||(21689782-21689985)
chr7 (1-333)||(21664476-21664796)
chr7 (6-314)||(15713991-15714305)
chr7 (6-169)||(21785780-21785943)
chr7 (9-169)||(21682027-21682187)
chr7 (248-342)||(21772551-21772645)
chr7 (6-131)||(21705011-21705136)
chr7 (246-342)||(21726432-21726528)
chr7 (1-100)||(21628497-21628596)
chr7 (27-139)||(21792385-21792497)
chr7 (455-517)||(21715006-21715068)
chr7 (458-590)||(21727153-21727282)
chr7 (30-169)||(21623591-21623730)
chr7 (8-97)||(21764420-21764509)
chr7 (6-131)||(21992556-21992681)
chr7 (512-590)||(21716679-21716757)
chr7 (6-169)||(21647121-21647284)
chr7 (33-99)||(21652461-21652527)
chr7 (3-149)||(21807793-21807939)
chr7 (456-590)||(21682566-21682702)
chr7 (215-327)||(21705193-21705305)
chr7 (271-342)||(21682241-21682312)
chr7 (30-121)||(21745924-21746015)
chr7 (245-328)||(21652770-21652853)
chr7 (245-312)||(21764636-21764703)
chr7 (76-131)||(21656895-21656950)
[»] scaffold0182 (2 HSPs)
scaffold0182 (6-131)||(25747-25872)
scaffold0182 (174-242)||(25900-25968)
[»] chr3 (1 HSPs)
chr3 (480-522)||(53472883-53472925)
[»] chr2 (1 HSPs)
chr2 (477-511)||(34486603-34486637)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 21714557 - 21714893
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    |||| |||||||||||||| | | |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21714557 atatcaaggttgatcaacttgttcttgtaatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 21714656  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagagaagaagaagaacatggttcca 205  Q
    | | |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21714657 ccagagtggattgataaaaagcatgatgaatttcctcgcctgtcatcattgggccacaccagatgagtcacagtcagagaagaagaaggacatggttcca 21714756  T
Q  206 aaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctca 305  Q
    |||||||||| | || |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  21714757 aaaagaaaagcagaaagagagcatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcaacgtaatatcatcctca 21714856  T
Q  306 ttacatctacaaccaaggtacaacaaaaatattagag 342  Q
    ||||||||||||||||||||||||| |||||||||||    
T  21714857 ttacatctacaaccaaggtacaacagaaatattagag 21714893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 21772335 - 21772553
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21772335 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 21772434  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagagaagaagaagaacatggttcca 205  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  21772435 cgagagtggcttgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagggaagaagaaggacatggttcca 21772534  T
Q  206 aaaagaaaaggaaaaggag 224  Q
    |||||||||||| ||||||    
T  21772535 aaaagaaaaggagaaggag 21772553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 21788603 - 21788922
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    ||||||| ||||||||||| | | |||||||| ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||| |       
T  21788603 atattaaagttgatcaactggttcttgtgatgatggatgtgcttctgttggagaatcaacttccttacgtagtactcaagctattgtggaaagataa--- 21788699  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagagaagaagaagaacatggttcca 205  Q
    ||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  21788700 cgatagtgaattgataaaaagcatgatgactttcctcgactgtcatcattgggccacaccagatgagtcacagccagataaggagaaggacatggttcca 21788799  T
Q  206 aaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctca 305  Q
    ||| |||| ||| ||||||| |||||| ||||||||   |||||||| |||| ||||||||||  |||||||||||||||||||||||| | ||||||||    
T  21788800 aaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacacccactcatcttcttgatcttcagcgtaaaatcatcctca 21788899  T
Q  306 ttacatctacaaccaaggtacaa 328  Q
     ||||||||   |||||||||||    
T  21788900 ctacatctaattccaaggtacaa 21788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 21726270 - 21726445
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    |||||| |||||||||||| | | |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21726270 atattagggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggacagatgaaga 21726369  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtca 181  Q
    ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  21726370 cgagagtggattgatagaaagcatgatgaatttcgtcgacggtcatcattgggccacaccagatgagtcccagtca 21726445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 455 - 590
Target Start/End: Original strand, 21772760 - 21772895
Alignment:
Q  455 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttactgc 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21772760 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttagtgc 21772859  T
Q  555 acatattagtattttccatattttaattacaaagtg 590  Q
    |||| |||||||||||||||||||||||||||||||    
T  21772860 acatgttagtattttccatattttaattacaaagtg 21772895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 179 - 338
Target Start/End: Original strand, 21786055 - 21786214
Alignment:
Q  179 tcagagaagaagaagaacatggttccaaaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttc 278  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  21786055 tcagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttc 21786154  T
Q  279 ttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatatt 338  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  21786155 ttgatcttcagcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatatt 21786214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 455 - 590
Target Start/End: Original strand, 21726640 - 21726775
Alignment:
Q  455 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttactgc 554  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21726640 gtattagttaaagtttaactattattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttagtgc 21726739  T
Q  555 acatattagtattttccatattttaattacaaagtg 590  Q
    |||| |||||||||| ||||||||||||||||||||    
T  21726740 acatgttagtatttttcatattttaattacaaagtg 21726775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 21689782 - 21689985
Alignment:
Q  1 tatggatattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  21689782 tatggatattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatgaagtactcgagctattgtggaaagat 21689881  T
Q  101 gaagacgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagagaagaagaagaacatgg 200  Q
     |  || | |||| ||||||| |||||| || |||||||||||| |||| ||  ||||||| ||||| | |||||||| |||||||| ||||  || |||    
T  21689882 aacaacaagagtgaattgataaaaagcacgacgaatttcctcgagtgtc-tc--tgggccagaccaggtaagtcacagccagagaaggagaaagacgtgg 21689978  T
Q  201 ttccaaa 207  Q
    |||||||    
T  21689979 ttccaaa 21689985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 21664476 - 21664796
Alignment:
Q  1 tatggatattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagat 100  Q
    |||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21664476 tatggatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaactaccttatcaagtactcaagctattgtggaaagat 21664575  T
Q  101 gaagacgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagagaagaagaagaacatgg 200  Q
    |||||| | |||||||||||||||||||| ||||||||| || | |   ||  || ||| | ||||| |||||| |||||||||||| |||   || |||    
T  21664576 gaagacaagagtggattgatagaaagcatcatgaatttcttcaaat---atattttggcaagaccaggtgagtcgcagtcagagaaggagatacacgtgg 21664672  T
Q  201 ttccaaaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcat 300  Q
    ||| |||  ||         ||||| |||| | |||||||||  ||||||||||||   |||||||||  ||||||||||||||||| |||||| | ||     
T  21664673 ttctaaacgga---------ggagaacatattgtatcaatactaaatgagtcacagctggagacacccactcatcttcttgatcttctgcgtaaaatcac 21664763  T
Q  301 cctcattacatctacaaccaaggtacaacaaaa 333  Q
    |||||||  ||||| | ||||||||||| ||||    
T  21664764 cctcattggatctaaacccaaggtacaataaaa 21664796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 15713991 - 15714305
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    |||||||| |||||||||| | | |||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |  |    
T  15713991 atattaagcttgatcaactggatcttgtgataatggatgtgcttttgttggagaatcaacttccttatgaagtactcaagctattgtggaaagataacaa 15714090  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagatgagtcacagtcagagaagaagaagaacatggttcca 205  Q
    ||| ||||  ||||||  | |||||  ||| ||||||  |  || ||||| ||  || |||||||||||| ||||| ||||| ||||||||  |||||||    
T  15714091 cgagagtgagttgataatatgcatgtggaaattcctcagccatcgtcatttggatacgccagatgagtcagagtcaaagaaggagaagaacggggttcca 15714190  T
Q  206 aaaagaaaaggaaaaggagagcatagtttatcaa------tacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagca 299  Q
    || ||||||||| ||||| |  ||||| ||||||      |||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||    |    
T  15714191 aacagaaaaggagaaggacaatatagtgtatcaataccattacgaaatgagtcacagtcagagacacccactcatcttcttgatctacagcgtaaatata 15714290  T
Q  300 tcctcattacatcta 314  Q
    |||||||||||||||    
T  15714291 tcctcattacatcta 15714305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 21785780 - 21785943
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||   ||    
T  21785780 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatgaagtcctcaaactattgtggaaagatagcga 21785879  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagat 169  Q
    ||| |||| ||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||    
T  21785880 cgagagtgaattgataaaaagcatgaagaatttcctcaaatgtcatcattgggccacaccagat 21785943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 21682027 - 21682187
Alignment:
Q  9 ttaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaagacga 108  Q
    |||||||||||||||| | | |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    | ||    
T  21682027 ttaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggaaagatagcaatga 21682126  T
Q  109 cagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagat 169  Q
     |||| ||||||| |||  |||| |||||||||||||||||||||||||||||||| ||||    
T  21682127 gagtgaattgataaaaattatgacgaatttcctcgactgtcatcattgggccacactagat 21682187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 21772551 - 21772645
Alignment:
Q  248 gagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatattagag 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21772551 gagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaataccatcctcattacatctacaaccaaggtacaacaaaaatattagag 21772645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 21705011 - 21705136
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    ||||||||||||||||||| ||| |||||| || ||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  21705011 atattaaggttgatcaactggctcttgtgagggaggatgtgcttttgttggagaatcaactgccttatgaagtactcaagcttttgtggaaagatgaaga 21705110  T
Q  106 cgacagtggattgatagaaagcatga 131  Q
     || |||||||| ||| |||||||||    
T  21705111 tgagagtggattaataaaaagcatga 21705136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 21726432 - 21726528
Alignment:
Q  246 atgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatattagag 342  Q
    ||||||| |||||| |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  21726432 atgagtcccagtcaaagacaccctttcatcttcttgatcgtcggcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatattagag 21726528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 21628497 - 21628596
Alignment:
Q  1 tatggatattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagat 100  Q
    ||||||||||||| |||||||||| | | |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  21628497 tatggatattaagcttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatgaagtactcaagctattgtggaaagat 21628596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 21792385 - 21792497
Alignment:
Q  27 ctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaagacgacagtggattgatagaaag 126  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||  || | |||| ||| ||||||||    
T  21792385 ctattgtgatgatggatgtgcttttgttggagaatcaactgccttatgaagtactcaagctattgtggaaagacgacaaccagagtgcattaatagaaag 21792484  T
Q  127 catgatgaatttc 139  Q
    ||||| |||||||    
T  21792485 catgacgaatttc 21792497  T

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Target: chr7; HSP #18
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 455 - 517
Target Start/End: Original strand, 21715006 - 21715068
Alignment:
Q  455 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataattt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715006 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataattt 21715068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 458 - 590
Target Start/End: Original strand, 21727153 - 21727282
Alignment:
Q  458 ttagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttactgcaca 557  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |   |||| | |||||||  | |||    
T  21727153 ttagtttaagtttacgtatcattaattttcaactttttgagaaataaattggcataatttctatttttggtattct---aacacgcgcccttagcgtaca 21727249  T
Q  558 tattagtattttccatattttaattacaaagtg 590  Q
    | |||||||||| ||||||||||||||||||||    
T  21727250 tgttagtatttttcatattttaattacaaagtg 21727282  T

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Target: chr7; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 21623591 - 21623730
Alignment:
Q  30 ttgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaagacgacagtggattgatagaaagcat 129  Q
    |||||||| | |||||| ||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |  |||| | || |||||||   | |||    
T  21623591 ttgtgatgattgatgtggttttgttggagaatcaactgccttatgaagtactcaagctattgtggaaagataacaacgagaatgaattgataatgaccat 21623690  T
Q  130 gatgaatttcctcgactgtcatcattgggccacaccagat 169  Q
    ||  |||||||||| |||||||| ||||||||||||||||    
T  21623691 gaaaaatttcctcggctgtcatctttgggccacaccagat 21623730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 21764420 - 21764509
Alignment:
Q  8 attaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaa 97  Q
    |||||||||| |||||| | | |||||||| |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  21764420 attaaggttggtcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacgaagtactcaagctattgtggaaa 21764509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 21992556 - 21992681
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    ||||||| ||||||||||| | | |||||||| ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||| |  |    
T  21992556 atattaaagttgatcaactggttcttgtgatgatggatgtgcttctgttggagaatcaacttccttacgtagtactcaagctattgtggaaagataacaa 21992655  T
Q  106 cgacagtggattgatagaaagcatga 131  Q
     || |||| ||||||| |||||||||    
T  21992656 tgagagtgaattgataaaaagcatga 21992681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 512 - 590
Target Start/End: Original strand, 21716679 - 21716757
Alignment:
Q  512 taatttctatttttggtatattatgaacatgtgcccttactgcacatattagtattttccatattttaattacaaagtg 590  Q
    |||||| ||| |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||    
T  21716679 taatttttatatttggtatattatgaacatgtgcccttagtgcgcatgttattattttccatattttaattacaaagtg 21716757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 21647121 - 21647284
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    |||||||||||||| |||| | | |||||||| |||||||||||||||| ||||||||||| |||||   ||||||||| ||||| | ||||||| |  |    
T  21647121 atattaaggttgataaactggttcttgtgatgatggatgtgcttttgttggagaatcaactcccttacatagtactcaaactattattgaaagataacaa 21647220  T
Q  106 cgacagtggattgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagat 169  Q
     || | || ||||||| | | |||||  ||||||||| | |||||||||||| |||||||||||    
T  21647221 tgagaatgaattgataaataccatgaaaaatttcctcaaatgtcatcattggaccacaccagat 21647284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 21652461 - 21652527
Alignment:
Q  33 tgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaaga 99  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  21652461 tgatgatggatgtgcttttgttggaaaatcaacttccttatcaagtactcaagcttttgtggaaaga 21652527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 21807939 - 21807793
Alignment:
Q  3 tggatattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatga 102  Q
    ||||||||||| |||||||||| | | || ||||   ||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||| ||||| |    
T  21807939 tggatattaagcttgatcaactggttcttctgataacggatgtgcttttgttggagaatcaactgccttataaagtacttaagctattgtgggaagataa 21807840  T
Q  103 agacgacagtggattgatagaaagcatgatgaatttcctcgactgtc 149  Q
      | ||  ||| ||||||| ||| ||||| |||||||| | ||||||    
T  21807839 caatgagggtgaattgataaaaatcatgaggaatttccccaactgtc 21807793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 456 - 590
Target Start/End: Original strand, 21682566 - 21682702
Alignment:
Q  456 tattagttaaagtttaactatcattaattttcaactttttgaga-----aataaactgacataatttctatttttggtatattatgaacatgtgccctta 550  Q
    |||||||| ||||||| |||| |||||||||||||||||||| |     || |||||| |||| |||||| |||||||||| ||   || |||| |||||    
T  21682566 tattagtttaagtttacctataattaattttcaactttttgaaagaaaaaaaaaactggcatactttctacttttggtatacta---acctgtggcctta 21682662  T
Q  551 ctgcacatattagtattttccatattttaattacaaagtg 590  Q
     ||||||| ||| ||| |||||||||||||||||||||||    
T  21682663 atgcacatgttactatcttccatattttaattacaaagtg 21682702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 21705193 - 21705305
Alignment:
Q  215 ggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatcta 314  Q
    ||||| ||||| |||||| |||||||||  ||||||||||||||||| ||||||   ||||||||||||||||| ||||| | ||||||||  |||||||    
T  21705193 ggaaatggagaacatagtgtatcaataccaaatgagtcacagtcagaaacacccacacatcttcttgatcttcaacgtaaaatcatcctcaccacatcta 21705292  T
Q  315 caaccaaggtaca 327  Q
       ||||||||||    
T  21705293 attccaaggtaca 21705305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 21682241 - 21682312
Alignment:
Q  271 tcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatattagag 342  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| || | |||| ||||||    
T  21682241 tcatcttcttgatcttcagcgtaatatcatcctcattaaatctacacccaaggtataatagaaatcttagag 21682312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 21745924 - 21746015
Alignment:
Q  30 ttgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaagacgacagtggattgata 121  Q
    |||||||| | ||||| |||||||| ||||||||||| |||||| |||||||| |||||||||| |||||| |  |||| |||| |||||||    
T  21745924 ttgtgatgatcgatgtacttttgttggagaatcaactgccttatgaagtactctagctattgtgaaaagataacaacgagagtgaattgata 21746015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 21652770 - 21652853
Alignment:
Q  245 aatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaa 328  Q
    ||||||||||||||| ||||||||  ||||||||||||||||| || ||| | |||||| | ||||||||   |||||||||||    
T  21652770 aatgagtcacagtcaaagacacccactcatcttcttgatcttctgcataaaatcatcctaactacatctaattccaaggtacaa 21652853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 21764636 - 21764703
Alignment:
Q  245 aatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatc 312  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||| |||   |||||||| ||||||    
T  21764636 aatgagtcacagtcagagacacccactcatcttctagatcttcagcataaagtcatcctcactacatc 21764703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 21656895 - 21656950
Alignment:
Q  76 agtactcaagctattgtggaaagatgaagacgacagtggattgatagaaagcatga 131  Q
    |||||||||||||||||||||||||||  || | |||| ||||||| |||||||||    
T  21656895 agtactcaagctattgtggaaagatgacaacaagagtgaattgataaaaagcatga 21656950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 25747 - 25872
Alignment:
Q  6 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatcaagtactcaagctattgtggaaagatgaaga 105  Q
    |||||||||||||||||||   | ||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||| | ||  |    
T  25747 atattaaggttgatcaactttttcttgtgatggtggatgtggttttgttggaaaatcaacttccttatgaagtactcaagctattgtggaaaaacgagaa 25846  T
Q  106 cgacagtggattgatagaaagcatga 131  Q
     || |||| ||||||| |||||||||    
T  25847 tgagagtgaattgatacaaagcatga 25872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 25900 - 25968
Alignment:
Q  174 cacagtcagagaagaagaagaacatggttccaaaaagaaaaggaaaaggagagcatagtttatcaatac 242  Q
    |||||||||||||| ||||| |||||| |||||| | ||| ||| |||||||  ||||| |||||||||    
T  25900 cacagtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaatatagtgtatcaatac 25968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 522
Target Start/End: Original strand, 53472883 - 53472925
Alignment:
Q  480 taattttcaactttttgagaaataaactgacataatttctatt 522  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  53472883 taattttcaactttttgagaaataaattgacataatttttatt 53472925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 511
Target Start/End: Complemental strand, 34486637 - 34486603
Alignment:
Q  477 cattaattttcaactttttgagaaataaactgaca 511  Q
    ||||||||||||||||||||||||||||| |||||    
T  34486637 cattaattttcaactttttgagaaataaattgaca 34486603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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