View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_21 (Length: 326)
Name: NF3155_low_21
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 46366947 - 46367250
Alignment:
| Q |
8 |
tgaaatgaagatagatatataaattgcatgtactatatactagttttattagcaaaagaaaatattaattacataaccataaccata------tgtctac |
101 |
Q |
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| T |
46366947 |
tgaaatgaagatagatatataaattgcatgtactatatactagttttattagcaaaagaaaatataaattacataaccataaccataaccatatgtctac |
46367046 |
T |
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| Q |
102 |
atgcggaaacaaaacaagcccatgccttcttcacttgtatatgaaaaacaaatctcagtgactctaagtgcattaaatgtgccatgccatggatccctgt |
201 |
Q |
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| T |
46367047 |
atgcggaaacaaaacaagcccatgccttcc---cttgtatatgaaaaacaaatctcagtgactctaagtgcattaaatgtgccatgccatggatccctgt |
46367143 |
T |
|
| Q |
202 |
gaatgagcatgcaaacaaattacaaaagccatttaaatagtcacgttggattactattattttactatactactatgtactagtatgaaaatggtcctca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46367144 |
gaatgagcatgcaaacaaattacaaaagccatttaaatagtcacgttggattactattattttactatactactatgtactagtatgaaaatggtcctca |
46367243 |
T |
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| Q |
302 |
cctcaca |
308 |
Q |
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||||||| |
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| T |
46367244 |
cctcaca |
46367250 |
T |
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