View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_22 (Length: 318)
Name: NF3155_low_22
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 122 - 299
Target Start/End: Original strand, 35678583 - 35678760
Alignment:
| Q |
122 |
ggatagatattaccatcatgattgtcaatgttgaaagtcgattttggacaagacttggagaaagtgaaagagaaggatggaacttttgaatnnnnnnngt |
221 |
Q |
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| T |
35678583 |
ggatagatattaccatcatgattgtcaatgtggaaagtcgattttggacaagacttggagaaagtgaaagagaaggatggaacttttgaataaaaaaagt |
35678682 |
T |
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| Q |
222 |
gataaggaattgacaaacaagagtttatatagtgatcaagattcactctaacgtcataaaacttattctcatcagcac |
299 |
Q |
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| T |
35678683 |
gataaggaattgacaagcaagagtctatatagtgatcaagattcactctagcgtcataaaacttattctcatcagcac |
35678760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 35684086 - 35684217
Alignment:
| Q |
122 |
ggatagatattaccatcatgattgtcaatgttgaaagtcgattttggacaagacttggagaaagtgaaagagaaggatggaacttttgaatnnnnnnngt |
221 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||||| | |
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| T |
35684086 |
ggatagacattaccatcatgactgtcaatgttgaaagtcgattttgaacaagacttgaagaaagtgaaagagtgtgatggaaattttgaataaaaaattt |
35684185 |
T |
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| Q |
222 |
gataaggaattgacaaa-caagagtttatata |
252 |
Q |
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| T |
35684186 |
gagaaggaattgacaaagcaagagtttatata |
35684217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35678462 - 35678519
Alignment:
| Q |
1 |
atgaagtgattgccagcaagtttacaagccaaggtacacacatcatatcctaagaaac |
58 |
Q |
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| T |
35678462 |
atgaagtgattgccagcaagtttacaagccaaggtacacacatcatatcctaagaaac |
35678519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35683965 - 35684022
Alignment:
| Q |
1 |
atgaagtgattgccagcaagtttacaagccaaggtacacacatcatatcctaagaaac |
58 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35683965 |
atgaagtaattgccagcaagtttacaagccaaggtacacacagcatatcctaagaaac |
35684022 |
T |
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