View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_27 (Length: 291)
Name: NF3155_low_27
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 12490410 - 12490676
Alignment:
| Q |
14 |
aaaaacaatataccataagtcataaccaaaccaaaaaatatcaagagtttcattaaccatggcttcttcaaaacaagaacaatcttccaccaacaaagag |
113 |
Q |
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| T |
12490410 |
aaaaacaatataccataagtcataaccaaaccaaaaaatatcaagagtttcattaaccatggcttcttcaaaacaagaacaatcttccaccaacaaagag |
12490509 |
T |
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| Q |
114 |
ctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaaattct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12490510 |
ctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaaattct |
12490609 |
T |
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| Q |
214 |
tctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12490610 |
tctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcccttcat |
12490676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 12505050 - 12505221
Alignment:
| Q |
109 |
aagagctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaa |
208 |
Q |
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||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||| || |||||||| |||| ||||| |||||||| |||||||| |
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| T |
12505050 |
aagagcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttttctataaccaaggcagagacaa |
12505149 |
T |
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| Q |
209 |
attcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcat |
280 |
Q |
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| T |
12505150 |
attcttctcaacaagaatacaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
12505221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 25732196 - 25732302
Alignment:
| Q |
175 |
gacacgactacttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcc |
274 |
Q |
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|||| ||||||||||||||||||||| | ||||||| |||| ||| |||||| ||||||||||||| || || ||| | |||||||||||||||| |
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| T |
25732196 |
gacatgactacttctacaaccaaggacgtgacaaatacttccaaaccagaatcgaaaaatacaactccactgtcctcaaactcaacatgccaccaggtgg |
25732295 |
T |
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| Q |
275 |
tttcatc |
281 |
Q |
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||||||| |
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| T |
25732296 |
tttcatc |
25732302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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