View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_28 (Length: 289)
Name: NF3155_low_28
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 6855242 - 6855520
Alignment:
| Q |
1 |
ggccttaaacatggaatccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttccca |
100 |
Q |
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| T |
6855242 |
ggccttaaacatggaatccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttccca |
6855341 |
T |
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| Q |
101 |
tcaagggttttgacaacccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatcttatttttcaggc |
200 |
Q |
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| T |
6855342 |
tcgagggttttgacaacccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatattatttttcaggc |
6855441 |
T |
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| Q |
201 |
cacgaagcgcaatttgcaaagttcnnnnnnntctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
279 |
Q |
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| T |
6855442 |
cacgaagcgcaatttgcaaagttcaaaaaaatctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
6855520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 24242532 - 24242462
Alignment:
| Q |
27 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
96 |
Q |
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| T |
24242532 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
24242462 |
T |
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