View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_36 (Length: 254)
Name: NF3155_low_36
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 34579626 - 34579381
Alignment:
| Q |
3 |
aatatccgtattcatgcaagtttgtatcgttttaatatcaaacaacatataaattcatgagattgtttcccgtacgttgcacgggtactca----tatta |
98 |
Q |
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| T |
34579626 |
aatatccgtattcatgcaagtttgtatcgttttaatatcaaacaacatataaattcatgagattgtttcccgtacgttgcacgggtactcactcatatta |
34579527 |
T |
|
| Q |
99 |
gtatgggaaaatatacattgacacccttttatttgtaccactcttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacata |
198 |
Q |
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| T |
34579526 |
gcatgggaaaatatgcattgacacccttttatttgtaccactcatgtaccatcctatgtggcatgggcatctaagtagtttcacctcaaaaccacacata |
34579427 |
T |
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| Q |
199 |
ctctttaatccactacttctctctaataatttgtttcttcttctct |
244 |
Q |
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| T |
34579426 |
ctctttaatccactacttctttctaataatatgcttcctcttctct |
34579381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 7934223 - 7934303
Alignment:
| Q |
164 |
ggcatctaagtaatttcacctcaaaaccacacatactctttaatccactacttctctctaataatttgtttcttcttctct |
244 |
Q |
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| T |
7934223 |
ggcatctaagtaatttcacctcaaaaccacacctactctgtaatccactacttctctctaataatctgtttcctcttctct |
7934303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 7932803 - 7932870
Alignment:
| Q |
103 |
gggaaaatatacattgacacccttttatttgtaccactcttgtac--caccttatgtggcatgggcat |
168 |
Q |
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| T |
7932803 |
gggaaaatatacattgacacccttttatttgtaccacttttgtaccacacccaatgtggcatgggcat |
7932870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 6443236 - 6443196
Alignment:
| Q |
106 |
aaaatatacattgacacccttttatttgtaccactcttgta |
146 |
Q |
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| T |
6443236 |
aaaatataggttgacacccttttatttgtaccactcttgta |
6443196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 45624105 - 45623962
Alignment:
| Q |
101 |
atgggaaaatatacattgacacccttttatttgtaccactcttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacatact |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45624105 |
atgggaaaatatacattgacacctttttatttgtaccactcttataccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacctact |
45624006 |
T |
|
| Q |
201 |
ctttaatccactacttctctctaataatttgtttcttcttctct |
244 |
Q |
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| T |
45624005 |
ctttaatccactacttctctctaataatctgtttcctcttctct |
45623962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 16249388 - 16249262
Alignment:
| Q |
101 |
atgggaaaatatacattgacacccttttatttgtaccactcttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacatact |
200 |
Q |
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|||||||||||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16249388 |
atgggaaaatatgcatggacacctttttatttgtaccactcttgtaccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacccact |
16249289 |
T |
|
| Q |
201 |
ctttaatccactacttctctctaataa |
227 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
16249288 |
ctttaatccactacttctctctcataa |
16249262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 9810356 - 9810236
Alignment:
| Q |
107 |
aaatatacattgacacccttttatttgtaccactcttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacatactctttaa |
206 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||| |||| ||||||| |||||||||| ||| ||||||||| |
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| T |
9810356 |
aaatataagttgacacccttttgtttgtaccactcttgtaccatcctatgtggtatgggtatcttggtaattttacctcaaaactacaaccactctttaa |
9810257 |
T |
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| Q |
207 |
tccactacttctctctaataa |
227 |
Q |
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|||||| ||||||||| |||| |
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| T |
9810256 |
tccactgcttctctctcataa |
9810236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 31887963 - 31888048
Alignment:
| Q |
142 |
ttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacatactctttaatccactacttctctctaataa |
227 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
31887963 |
ttgtaccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacccactctttaatccactacttctctctcataa |
31888048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 52623441 - 52623561
Alignment:
| Q |
107 |
aaatatacattgacacccttttatttgtaccactcttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacatactctttaa |
206 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||| |||| ||||||| |||||||||| ||| ||||||||| |
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| T |
52623441 |
aaatataagttgacacccttttgtttgtaccactcttgtaccatcctatgtggtatgggtatcttggtaattttacctcaaaactacaaccactctttaa |
52623540 |
T |
|
| Q |
207 |
tccactacttctctctaataa |
227 |
Q |
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|
|||||| ||| ||||| |||| |
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| T |
52623541 |
tccactgcttgtctctcataa |
52623561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 39939281 - 39939366
Alignment:
| Q |
142 |
ttgtaccaccttatgtggcatgggcatctaagtaatttcacctcaaaaccacacatactctttaatccactacttctctctaataa |
227 |
Q |
| |
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|||||||||| ||||||||||||| |||| ||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||| |
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| T |
39939281 |
ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaattacaaccactctttaatccactgcttctctctcataa |
39939366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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