View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3155_low_37 (Length: 254)
Name: NF3155_low_37
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34580110 - 34580348
Alignment:
| Q |
1 |
tttgtcaaaatctactaaattgtgttcttgaacttctactaaactaatcacctatagtataaatgaacaatcacaaaatgaaaatgagaaaatatctcaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34580110 |
tttgtcaagatctactaaattgtgttcttgaacttctactaaactaatcacctatagtataaatgaacaatcacaaaatgaaaatgagaaaatatctcaa |
34580209 |
T |
|
| Q |
101 |
gtattgttaggtagattcacatgagtaaatcattgtttgtttatctaattttcaaggttttattcatgtcaagtgaatgactaatgactaaaagatagaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34580210 |
gtattgttaggtagatttacatgagtaaatcattgtttgtttatctaattttcaaggttttattcatgtcaagtgaatgactaatgactaaaagatagaa |
34580309 |
T |
|
| Q |
201 |
aaaggggtaccttttcataaaggtcttgtgaatattaat |
239 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34580310 |
aaaggggtaccttttcataaaggtcttatgaatattaat |
34580348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 27854813 - 27854771
Alignment:
| Q |
119 |
acatgagtaaatcattgtttgtttatctaattttcaaggtttt |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
27854813 |
acatgagtaaagcattgtttgtttatctaatattcaaggtttt |
27854771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University