View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_5 (Length: 523)
Name: NF3155_low_5
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Complemental strand, 11615980 - 11615481
Alignment:
| Q |
6 |
aggagcacagaaatatattttggaaggagttacttttactctatgaacatacaccaatccatcatctaaagaaatggaactagatataggaattgaacta |
105 |
Q |
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| T |
11615980 |
aggaccacagaaatatattttggagggagttacttttactctatgaacatacaccaatccatcatctaaagaaatggaactagatataggaattgaacta |
11615881 |
T |
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| Q |
106 |
tttgttgagtatctttgatattgtttctccaaccattgaacaggatcatagcaacattctttcatctgatataacttattcaaagcactttctacatatt |
205 |
Q |
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| T |
11615880 |
tttgttgagtatctttgatattgtttctccaaccattgaacaggatcatagcaacattctttcatctgatataacttattcaaagcactttctacatatt |
11615781 |
T |
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| Q |
206 |
caaattttattctttgtggatcaaccatatgaaaaagattagtgtcaattgcttgcaaaggaaggcaactatgttgaactagtgagttgattttgaacag |
305 |
Q |
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| T |
11615780 |
caaattttattctttgtggatcaaccatatgaaaaagattagtgtcaattgcttgcaaaggaaggcaactatgttgaactagtgagttgattttgaacag |
11615681 |
T |
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| Q |
306 |
aattttgtatggcaagttgaatccttctggcggaatcaccatggggacaaaattcaaatttgatgagaaaccaagttgtttctcaagatcaaaggtgtta |
405 |
Q |
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| T |
11615680 |
aattttgtatggcaagttgaatccttctggcggaatcaccatggggacaaaattcaaatttgatgagaaaccaagttgtttctcaagatcaaaggtgtta |
11615581 |
T |
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| Q |
406 |
tcaactttataaaaatttctataatattgacaaaaattcggaacctctgtattttgtggaagctcaaaacataaagatgatgattggccaatgcagcatg |
505 |
Q |
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| T |
11615580 |
tcaactttataaaaatttctataatactgacaaaaattcggaacctcggtattttgtggaagctcaaaacataaagatgatgattggccaatgcagcatg |
11615481 |
T |
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