View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3155_low_9 (Length: 447)
Name: NF3155_low_9
Description: NF3155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3155_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 45578026 - 45578439
Alignment:
| Q |
16 |
atcgcaacaaacgaactatccaaacctcattggtttgatctggttcggttcatattttaaaagccagccaaatcaaaccgtttatctttttatctttcgg |
115 |
Q |
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| T |
45578026 |
atcgcaacaaacgaactatccaaacctcattggtttgatttggttcggtttatattttaaaagccagccaaatcaaaccgtttatctttttatctttcgg |
45578125 |
T |
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| Q |
116 |
cttggatgtattttattctcaaaactgaaccaattcacatcacaaacacccctcttggagggcgcgtaagaaagacggagtgtgggaaatgaaaatctca |
215 |
Q |
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| T |
45578126 |
tttggatgtattttattatcaaaactgaaccaattcgcaccacaaacacccctcttggagggcgcgtaagaaagacggagtgtgggaaatgaaaatctca |
45578225 |
T |
|
| Q |
216 |
ttttttaatccaagaaccacaattaggatgtgatgggctttaaatccaaacagcccattttaacatactcccagcaccgttcaattt-cccatttccatt |
314 |
Q |
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| T |
45578226 |
ttttttaatccaagaaccacaagtaggatgtgatgggctttaaatccaaacagcccattttaacatactcccaacaccgttcaatttccccatttccatt |
45578325 |
T |
|
| Q |
315 |
tcattccattcgcatcgagaatcaatcacaaccatggcgaaatctgcatcctccctattgcagaagctaaaaagcttcatcaaagcaccatgggagataa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
45578326 |
tcattccattcgcatcgagaatcaatcacaaccatggcgaaatctgcatcctccctattgcagaagctgaaaagcttcatcaaagcgccatgggagataa |
45578425 |
T |
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| Q |
415 |
caggacctgtttcc |
428 |
Q |
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||||||| |||||| |
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| T |
45578426 |
caggacccgtttcc |
45578439 |
T |
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