View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3157_high_2 (Length: 531)
Name: NF3157_high_2
Description: NF3157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3157_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Original strand, 3361142 - 3361640
Alignment:
| Q |
19 |
accaagtgtgaagaagattaatatttgtgtgcaagaagaaacaacaatatcatctaaagcactgaacttcatgtaattaaagccaaaccttgccatgaga |
118 |
Q |
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| T |
3361142 |
accaagtgtgaagaagattaatatttgtgtacaagaagaaacaacaatatcatctaaagcactgaacttcatgtaa----agccaaaccttgccatgtga |
3361237 |
T |
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| Q |
119 |
atcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatga |
218 |
Q |
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| T |
3361238 |
atcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatga |
3361337 |
T |
|
| Q |
219 |
tcactctttaaagtggtgactgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggcca |
318 |
Q |
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| T |
3361338 |
tcactctttaaagtggtgaccgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggcca |
3361437 |
T |
|
| Q |
319 |
aatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361438 |
aatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacatt |
3361537 |
T |
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| Q |
419 |
caaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcgaattagtcagtcct |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||| |
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| T |
3361538 |
caaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcgaattagtcagtcct |
3361637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 472
Target Start/End: Original strand, 35907360 - 35907688
Alignment:
| Q |
144 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
243 |
Q |
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||||||| ||||||||||||| ||||||| ||| ||||| |||||| | ||||| | || ||| ||| | |||| ||||||| |||||| | || ||| |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
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| Q |
244 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
343 |
Q |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
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| Q |
344 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatct |
443 |
Q |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatct |
35907659 |
T |
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| Q |
444 |
gcaaaactcaacagaaagctacagtaaat |
472 |
Q |
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||||||||||||| |||||| |||||||| |
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| T |
35907660 |
gcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
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