View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3157_low_10 (Length: 249)
Name: NF3157_low_10
Description: NF3157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3157_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 4710471 - 4710242
Alignment:
| Q |
20 |
aacctaacaatatattataaaataaacttgttgcaatatcttgtgtgtgcatatgtagggtggtgacaaaatagacaaccctttaaagaatggttgtgat |
119 |
Q |
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| T |
4710471 |
aacctaacaatatattataaaataaacttgttgcaatatcttgtgtgtgcatatgtagggtggtgacaaaatagacaaccctttaaagaatggttgtgat |
4710372 |
T |
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| Q |
120 |
ggctgattaggatcgacaaatttaacttagctaaaccatgcatatagataacataatatgaatattatcaatattgttttttcttttcaaatttcgtaaa |
219 |
Q |
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| T |
4710371 |
ggctgattaggatcgacaaatttaacttagctaaaccatgcatatagataacataatatgaatactatcaatattgttttttcttttcaaatttagtaaa |
4710272 |
T |
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| Q |
220 |
tcatcttaagtgaattgtgctgccttgtgc |
249 |
Q |
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| T |
4710271 |
tcatcttaagtgaattgtgctgccttgtgc |
4710242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 45251854 - 45252072
Alignment:
| Q |
22 |
cctaacaatatattataaaataaacttgttgcaatatcttgtgtgtgcatatgtagggtggtgacaaaatagacaaccctttaaagaatgg-ttgtgatg |
120 |
Q |
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| T |
45251854 |
cctaacaatatgttataaaataaacttgttgcaatatcttgtgtgtgcatatgtagagtggtgacaaaatagacaaccctttaaagaatggtttgtgatg |
45251953 |
T |
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| Q |
121 |
gctgattaggatcgacaaatttaacttagctaaaccatgcatatagataacataatatgaatattatcaatattgttttttcttttcaaatttcgtaaat |
220 |
Q |
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| T |
45251954 |
tctgatgaggat-gactaatttgactt-----gaccatgc--atagataacataatatgaatattatcaatactgttttttcttttcaaatttagtaaat |
45252045 |
T |
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| Q |
221 |
catcttaagtgaattgtgctgccttgt |
247 |
Q |
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| T |
45252046 |
tatcttaagtgaattgtgctgccttgt |
45252072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 54245158 - 54244941
Alignment:
| Q |
21 |
acctaacaatatattataaaataaacttgttgcaatatcttgtgtgtgcatatgtagggtggtgacaaaatagacaaccctttaaagaatggttgtgatg |
120 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54245158 |
acctaacaatatgttataaa-taaacttgttgcaatatcttgtgtgtgcatatgtagagtggtgacaaaatagacaaccctttaaagaatggttgggatg |
54245060 |
T |
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| Q |
121 |
gctgattaggatcgacaaatttaacttagctaaaccatgcatatagataacataatatgaatattatcaatattgttttttcttttcaaatttcgtaaat |
220 |
Q |
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||||| ||||| ||| | ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54245059 |
tctgatgaggat-gactagtttgactt-----aaccatgc--atagataacataatatgaatattatcaatattgttttttcttttcaaatttagtaaat |
54244968 |
T |
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| Q |
221 |
catcttaagtgaattgtgctgccttgt |
247 |
Q |
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| T |
54244967 |
tattttaagtgaattgtgctgccttgt |
54244941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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