View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3157_low_11 (Length: 248)
Name: NF3157_low_11
Description: NF3157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3157_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 5415305 - 5415086
Alignment:
| Q |
10 |
agaagcaaaggcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgca |
109 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5415305 |
agaagcaaaagcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgca |
5415206 |
T |
|
| Q |
110 |
attccaggaagtgttactacatgatcattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctacca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5415205 |
attccaggaagtgttactacatgatcattgttaagattcacaataacagcagcacaacccgcaaatatcatcatgtatgttcccaccacttctgctacca |
5415106 |
T |
|
| Q |
210 |
gctattttcaatatccaaca |
229 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5415105 |
gctattttcaatatccaaca |
5415086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 5388751 - 5388562
Alignment:
| Q |
20 |
gcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccaggaa |
119 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||| || || |||||| |
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| T |
5388751 |
gcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggat |
5388652 |
T |
|
| Q |
120 |
gtgttactacatgatcattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctacca |
209 |
Q |
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| T |
5388651 |
gtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctacca |
5388562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 5402560 - 5402371
Alignment:
| Q |
20 |
gcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccaggaa |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||| || || |||||| |
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| T |
5402560 |
gcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggat |
5402461 |
T |
|
| Q |
120 |
gtgttactacatgatcattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctacca |
209 |
Q |
| |
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| T |
5402460 |
gtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctacca |
5402371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 5396860 - 5396660
Alignment:
| Q |
20 |
gcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccaggaa |
119 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| || ||||| | ||| || | || |||||||||| | ||||||| ||| || |||||||||| |
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| T |
5396860 |
gcaatggtgacagcgggattgaaatgagcaccagagatatgacctatagaatagactaataccataacagcaagtccccaaacaattgatattccaggaa |
5396761 |
T |
|
| Q |
120 |
gtgttactacatgatcattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctaccagctattttca |
219 |
Q |
| |
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|||| || || | |||||||||||| ||||| | ||||||||||| ||||||||||||| | | |||||||||||||||||||||||| |||| |||| |
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| T |
5396760 |
gtgtcacaactttatcattgttaaggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatattca |
5396661 |
T |
|
| Q |
220 |
a |
220 |
Q |
| |
|
| |
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|
| T |
5396660 |
a |
5396660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 5407918 - 5408112
Alignment:
| Q |
20 |
gcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccaggaa |
119 |
Q |
| |
|
|||||||| || || || |||||||| |||||||| || ||||| | ||| || | || ||||||||| | ||||||| ||| |||||||||||||| |
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| T |
5407918 |
gcaatggtgaccgcgggattgaaatgggcaccagagatatgacctatagaatagactaataccataacaacaagtccccaaacaattgcaattccaggaa |
5408017 |
T |
|
| Q |
120 |
gtgttactacatgatcattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctaccagctat |
214 |
Q |
| |
|
|||| || || | |||||||||||| ||||| | |||| | |||| ||||||||||||| | | |||||| ||||||||||||||||| |||| |
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|
| T |
5408018 |
gtgtcacaactttatcattgttaaggttcaccaccacagaaccacatccagcaaatatcaagaagaatgttcgcaccacttctgctaccaactat |
5408112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 5398834 - 5398805
Alignment:
| Q |
49 |
accagaaatgtgaccaacagagtaaatcaa |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5398834 |
accagaaatgtgaccaacagagtaaatcaa |
5398805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 5398798 - 5398750
Alignment:
| Q |
94 |
tccccaagcaaatgcaattccaggaagtgttactacatgatcattgtta |
142 |
Q |
| |
|
|||||| | ||||||||||||| ||||||| |||||| ||||||||||| |
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|
| T |
5398798 |
tccccatgtaaatgcaattccaagaagtgtcactacacgatcattgtta |
5398750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 36267752 - 36267625
Alignment:
| Q |
14 |
gcaaaggcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattc |
113 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| || ||||| |||| | ||||||| ||| || ||||| |
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|
| T |
36267752 |
gcaaaagcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattc |
36267653 |
T |
|
| Q |
114 |
caggaagtgttactacatgatcattgtt |
141 |
Q |
| |
|
||||||||||||| |||| |||||||| |
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|
| T |
36267652 |
caggaagtgttacaacattttcattgtt |
36267625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 36262592 - 36262476
Alignment:
| Q |
13 |
agcaaaggcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaatt |
112 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||||| |||| | ||| | ||||||| ||| |||||| |
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|
| T |
36262592 |
agcaaaagcaatagtaacagcaggattgaaatgagcaccagagatatgaccaagagagtaaatcaataccaacaaagttagtccccaaacaattgcaatc |
36262493 |
T |
|
| Q |
113 |
ccaggaagtgttactac |
129 |
Q |
| |
|
|| |||||||||||||| |
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|
| T |
36262492 |
cctggaagtgttactac |
36262476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 34019224 - 34019174
Alignment:
| Q |
23 |
atggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaa |
73 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || ||||||||||||||| |
|
|
| T |
34019224 |
atggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaa |
34019174 |
T |
|
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