View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3157_low_4 (Length: 498)
Name: NF3157_low_4
Description: NF3157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3157_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 45527069 - 45526844
Alignment:
| Q |
20 |
acagtcaccttctctagcaaatgctccttccaaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaaggtatcatca |
119 |
Q |
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| T |
45527069 |
acagtcaccttctctagcaaatgctccttccaaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaaggtatcatca |
45526970 |
T |
|
| Q |
120 |
tatatttcatcatcgtctgaaattttagggtttattgtcgttgatcgtacgtaaacttaattgattgttctttcatgttagggtttaagatattcactga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45526969 |
tatatttcatcatcgtctgaaattttagggtttattgccgttgatcgtacgtaaacttaattgattgttctttcatgttagggtttaagatattcactga |
45526870 |
T |
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| Q |
220 |
acattgatcatcagaattcacttctg |
245 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45526869 |
acattgatcatcagaattcacttctg |
45526844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 251 - 460
Target Start/End: Complemental strand, 45526770 - 45526567
Alignment:
| Q |
251 |
attacggtagtgcagtagatccgatgttccactgaaccaccatgttggtttggtttgtaaagatattagattagatctacctagcacttacacttctgaa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
45526770 |
attacggtagtgcagtagatccgatgttccactgaaccaccatgttggtttggtttgtaaagatatcagattagatctacctagcgcttacacttctgaa |
45526671 |
T |
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| Q |
351 |
tgatgattgaaaacatgtctggtgtccgactgttgtcaccgacacttttgattacattcaattatgccatttattattttannnnnnnaaataattaccg |
450 |
Q |
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| T |
45526670 |
tgatgattgaaaacatgtctggtgtccgacttttgtcaccgacacttttgattacattcaattatgccattttttttttta------aaaataattaccg |
45526577 |
T |
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| Q |
451 |
ctgtcaatgt |
460 |
Q |
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|||||||||| |
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| T |
45526576 |
ctgtcaatgt |
45526567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 45534672 - 45534571
Alignment:
| Q |
20 |
acagtcaccttctctagcaaatgctccttccaaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaaggtatcatca |
119 |
Q |
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|||||||||||| | | ||||||| |||||||||||||||| |||||| | ||||| |||| |||||||||||||||| ||| ||||||||||| |||| |
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| T |
45534672 |
acagtcaccttcagttgtaaatgcttcttccaaaaaggctctttatcttgctctatctgatcaacctatcatcatcgacaatggcaaaaaggtataatca |
45534573 |
T |
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| Q |
120 |
ta |
121 |
Q |
| |
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|| |
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|
| T |
45534572 |
ta |
45534571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 35223016 - 35222950
Alignment:
| Q |
51 |
aaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaaggtatcat |
117 |
Q |
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|||||| ||||||||||| |||| || ||| ||||||||||||||||||| ||||||||||||| |
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| T |
35223016 |
aaaaagtctctctatcttgccctctctaatcaccctatcatcatcgacgatggtaaaaaggtatcat |
35222950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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