View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3157_low_5 (Length: 391)

Name: NF3157_low_5
Description: NF3157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3157_low_5
NF3157_low_5
[»] chr2 (6 HSPs)
chr2 (17-391)||(2485800-2486195)
chr2 (235-391)||(2469505-2469659)
chr2 (241-347)||(2473783-2473886)
chr2 (120-179)||(2482752-2482811)
chr2 (63-136)||(2469332-2469399)
chr2 (120-160)||(2478327-2478367)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 2485800 - 2486195
Alignment:
Q  17 aaccatttactaagatagtttcaaatcaattctacaaatctagaatatatattttttggtcaaagatctagaatcaaaatcaatcgtatatcatccaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2485800 aaccatttactaagatagtttcaaatcaattctacaaatctagaatatatattttttggtcaaagatctagaatcaaaatcaatcgtatatcatccaaaa 2485899  T
Q  117 -ttgaaaccaaagatacttaccgtaatccaccatgagaattacgttaaaattgatgaaaatgaagttttcccgatcatagacacaatttccattttgaaa 215  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2485900 attgaaaccaaagatacttaccctaatccaccatgagaattacgttaaaattgatgaaaatgaagttttcccgatcatagacacaatttcctttttgaaa 2485999  T
Q  216 ataataataacatac--------------------tttacaaatctgtataaatacatcactagagccccaacaagaattctcatcaaacacccacaaaa 295  Q
    |||||||||||||||                    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2486000 ataataataacatactcaattactacattttcatgtttacaagtctgtataaatacatcactagagccccaacaacaattctcatcaaacacccacaaaa 2486099  T
Q  296 ccatttagcattcagaaatttatagaaatcagcaaaatggattcattttctcaattgtgcttgttaggtttaacactcattatgggtagtcacgtt 391  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2486100 ccatttagcattcagaaatttatagaaatcagcaaaatgggttcattctctcaattgtgcttgttaggtttaacactcattatgggtagtcacgtt 2486195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 391
Target Start/End: Original strand, 2469505 - 2469659
Alignment:
Q  235 caaatctgtataaatacatcactagagccccaacaagaattctcatcaaacacccacaaaa-ccatttagcattcagaaatttatagaaatcagcaaaat 333  Q
    ||||| ||| |||||||| |||||||||||||||||   || |||||||| | | |||||| ||||||||||||| ||| |||||| |||| ||| ||||    
T  2469505 caaatttgtttaaatacaacactagagccccaacaa---ttttcatcaaagaactacaaaaaccatttagcattctgaattttataaaaataagctaaat 2469601  T
Q  334 ggattcattttctcaattgtgcttgttaggtttaacactcattatgggtagtcacgtt 391  Q
    || ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  2469602 gggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgtt 2469659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 2473783 - 2473886
Alignment:
Q  241 tgtataaatacatcactagagccccaacaagaattctcatcaaacacccacaaaaccatttagcattcagaaatttatagaaatcagcaaaatggattca 340  Q
    |||||||||||| ||||||| || ||||||   || |||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||| ||||    
T  2473783 tgtataaatacaacactagaccctcaacaa---ttttcatcaaacacccacaaaacgatttaacattctgaaatttatagaaatcaggaaaatgggttca 2473879  T
Q  341 ttttctc 347  Q
    |||||||    
T  2473880 ttttctc 2473886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 2482752 - 2482811
Alignment:
Q  120 aaaccaaagatacttaccgtaatccaccatgagaattacgttaaaattgatgaaaatgaa 179  Q
    |||| |||||||||| |  |||||||||||||||||||||| | ||||||||||||||||    
T  2482752 aaactaaagatacttgctctaatccaccatgagaattacgtcacaattgatgaaaatgaa 2482811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 2469332 - 2469399
Alignment:
Q  63 atatattttttggtcaaagatctagaatcaaaatcaatcgtatatcatccaaaattgaaaccaaagatacttac 136  Q
    ||||||||||||||||||||| |||||||||      |  |||||||||||||| |||||||||||||||||||    
T  2469332 atatattttttggtcaaagatttagaatcaa------ttctatatcatccaaaagtgaaaccaaagatacttac 2469399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 2478327 - 2478367
Alignment:
Q  120 aaaccaaagatacttaccgtaatccaccatgagaattacgt 160  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  2478327 aaaccaaagatacttgctctaatccaccatgagaattacgt 2478367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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