View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3157_low_8 (Length: 290)

Name: NF3157_low_8
Description: NF3157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3157_low_8
NF3157_low_8
[»] chr3 (11 HSPs)
chr3 (18-280)||(5850965-5851227)
chr3 (20-222)||(5500722-5500924)
chr3 (20-222)||(5487905-5488107)
chr3 (20-196)||(5856085-5856261)
chr3 (20-221)||(5482480-5482678)
chr3 (20-240)||(5804442-5804659)
chr3 (20-186)||(5830241-5830404)
chr3 (20-219)||(5523590-5523789)
chr3 (20-222)||(20341512-20341711)
chr3 (20-225)||(5452636-5452838)
chr3 (20-196)||(5444240-5444413)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 5851227 - 5850965
Alignment:
Q  18 agcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5851227 agcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatgg 5851128  T
Q  118 cctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5851127 cctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataag 5851028  T
Q  218 ctcaatccatactctattttcattcgaagtaatgattgataattgttactgtgaaggtctgtg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5851027 ctcaatccatactctattttcattcgaagtaatgattgataattgttactgtgaaggtctgtg 5850965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 5500722 - 5500924
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| || |||||||||     
T  5500722 cataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagacccacatgaataaatcttagtatttctgtacatatggcg 5500821  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
    |||||||| ||||||| || |||||| ||||| ||||| |||||||| ||||||||||||||||||| ||||||||| ||| ||||| || || ||||||    
T  5500822 tcatcatcatataatacgtcagctattaactccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagttacaacatgagtaagct 5500921  T
Q  220 caa 222  Q
    |||    
T  5500922 caa 5500924  T

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Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 5487905 - 5488107
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||| ||| |||||||||||||||||||||||||||||  |||||| ||||||| ||||||||| |||| |||||||||||||| |||||||||||||    
T  5487905 cataaagaccacagatgacatgttaggcctattttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcc 5488004  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
    |||||||| ||||||| || |||||| ||||| ||||| |||||||| ||||||||| ||||||||| ||||||||| ||| ||||| || || ||||||    
T  5488005 tcatcatcatataatacgtcagctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatgacatcaaagttacaacatgagtaagct 5488104  T
Q  220 caa 222  Q
    |||    
T  5488105 caa 5488107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 5856261 - 5856085
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||| ||| |||||||||| |||||||||| |||||||  |||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||| |    
T  5856261 cataaagaccacagatgacatattaggcctatcttctggtagctgttgtacacacaatagaccaacatgaataaatcttattatttctgaacatatgggc 5856162  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacat 196  Q
    |||||||||| ||||||||  ||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  5856161 tcatcatcgtctaatatgtctgctattaactctagtggtctttcttcaatccatagtctccatgcctaaaatgacat 5856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 5482480 - 5482678
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||| |     
T  5482480 cataaaaaccacagatgacatgttaggcctattttctggtttctgttgaacacacaatagaccaacatgaataaatcttattatttttgaagatatgaca 5482579  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
    |||||||   |  |||||| |||||| ||||| |||| |||| |||| ||||||||||||||||||| ||||||||| ||| ||||| |||||  |||||    
T  5482580 tcatcat---acgatatgtcagctattaactccagtgtccttccttcaatccatagtctccatgcctaaaatgacatcaaagttacaacaagagaaagct 5482676  T

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Target: chr3; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 5804659 - 5804442
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||| |||||       
T  5804659 cataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagcccaacatgaataaatcttattatttttgaagatatg--- 5804563  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
    |||| ||| |||||||||| ||| |  |||||   ||||||||  || ||||||||||||||||||| ||||||||| ||| ||| |  |||| ||||||    
T  5804562 tcattatcatataatatgtcagcaagcaactcctctggcctttgctcaatccatagtctccatgcctaaaatgacatcaaagttatagtaagagtaagct 5804463  T
Q  220 caatccatactctattttcat 240  Q
    |||||| ||||| ||||||||    
T  5804462 caatccttactcaattttcat 5804442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 5830404 - 5830241
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||||     
T  5830404 cataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttttgaagatatggca 5830305  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcct 186  Q
    |||||||   |  |||||| |||||||||||| |||| ||||||||| ||||||| || ||||||||    
T  5830304 tcatcat---acgatatgtcagctatgaactccagtgacctttcttcaatccataatcgccatgcct 5830241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 5523590 - 5523789
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||| ||| |||||||||| |||||||||| |||||||  ||| ||||| |||| ||||||||| |||| |||||||||||||| |||||||||||||    
T  5523590 cataaagaccacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcc 5523689  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
    |||||||| ||||||||||  ||||| ||||| ||||| |||||||| ||||||||| ||||||||| ||||||||| ||| ||||| || || ||||||    
T  5523690 tcatcatcatataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgccttaaatgacatcaaagttacaacatgagtaagct 5523789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 20341512 - 20341711
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||| || |||| |||||||||||| | |||||||||||||    
T  20341512 cataaaaaccacagatgacatgttaggcctattttctgctttctgttgtacacacaataaacccacatgaataaatcttattatatctgaacatatggcc 20341611  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
    ||||||   ||| |||||| |||||| |||||   || ||||||||| ||||||||||||||||||| ||||||||| ||  |||||  |||| ||||||    
T  20341612 tcatca---tatgatatgtcagctattaactcctttgccctttcttcaatccatagtctccatgcctaaaatgacatcaaggttacaaaaagagtaagct 20341708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 5452636 - 5452838
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  || ||||| |||    
T  5452636 cataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttcggagcatattgcc 5452735  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct 219  Q
       ||||||||||| |||| |||||| |||||   ||||||  |||| ||||| ||||||||||||| ||||||||| ||  |||||   ||| ||||||    
T  5452736 ---tcatcgtataacatgtcagctattaactcctctggcctgccttcaatccacagtctccatgcctaaaatgacatcaaggttacagacagagtaagct 5452832  T
Q  220 caatcc 225  Q
    ||||||    
T  5452833 caatcc 5452838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 5444240 - 5444413
Alignment:
Q  20 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 119  Q
    |||||||||| | ||||||||||||||||||||||| |||  |||||| ||||||| ||||||||| |||| |||||||||||||| |||||| || |||    
T  5444240 cataaaaaccaccgatgacatgttaggcctattttccggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacacattgcc 5444339  T
Q  120 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacat 196  Q
    ||||||   |||||||||| ||| || |||||   ||||||  |||| ||||| | | ||||||||| |||||||||    
T  5444340 tcatca---tataatatgtcagccattaactcctctggcctgccttcaatccacaatttccatgcctaaaatgacat 5444413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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