View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3157_low_9 (Length: 250)

Name: NF3157_low_9

Description: NF3157

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3157_low_9

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 237; E-Value: 1e-131

Query Start/End: Original strand, 10 - 250

Target Start/End: Original strand, 13005978 - 13006218

Alignment:

Q	10	aagaatattaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatttccacaggttgcagttacaccacat	109	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13005978	aagaattttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatttccacaggttgcagttacaccacat	13006077	T

Q	110	ctctttcagtctttctaaatgccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgcaaccacaatgttttttctgatggct	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13006078	ctctttcagtctttctaaatgccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgcaaccacaatgttttttctgatggct	13006177	T

Q	210	tgtttttcagtgtggataacaagaattaatggatatcagtt	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13006178	tgtttttcagtgtggataacaagaattaatggatatcagtt	13006218	T

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Target: chr8; HSP #2

Raw Score: 56; E-Value: 3e-23

Query Start/End: Original strand, 17 - 246

Target Start/End: Complemental strand, 13121413 - 13121155

Alignment:

Q	17	ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataa-----tatttcca------caggttgcagttacacc	105	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|
T	13121413	ttaaggttgttagactaaatgcttggcattgcaattgcattgactggtagttggctatggataagataatattatcaatttagcatgttacagttacacc	13121314	T

Q	106	acatctctttcagtctttctaaat-gccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgc-----------------aac	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\| \|\|\|\|\| \| \| \|\|\| \| \|\|\|
T	13121313	acatctctttcagtctttctcaattgccattctctaaacgacatatttcaatcaaatgggttatcctttgcgaaattttctacggaaaatgaattccaac	13121214	T

Q	188	cacaatgttttttctgatggcttgtttttcagtgtggataacaagaattaatggatatc	246	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	13121213	cacaatgttttttctgatagcttggttttcagtgtggataacaagaattaatgtatatc	13121155	T

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Target: chr8; HSP #3

Raw Score: 48; E-Value: 2e-18

Query Start/End: Original strand, 17 - 84

Target Start/End: Original strand, 13005218 - 13005285

Alignment:

Q	17	ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatt	84	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	13005218	ttaaggtagttagactaagtactttgcactgcagttgcattgactggtagttgggtatggataatatt	13005285	T

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Target: chr8; HSP #4

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 108 - 168

Target Start/End: Complemental strand, 13111594 - 13111531

Alignment:

Q	108	atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat	168	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	13111594	atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat	13111531	T

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Target: chr8; HSP #5

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 108 - 168

Target Start/End: Original strand, 18671585 - 18671648

Alignment:

Q	108	atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat	168	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	18671585	atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat	18671648	T

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