View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_high_3 (Length: 451)
Name: NF3158_high_3
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 45547091 - 45546643
Alignment:
| Q |
1 |
tcatcattatcatcacttgtagaacaattaaagtaactgtagaaaaagtgacagggcaacactgtagagtcactgtccatactcggttagtagtacgtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45547091 |
tcatcattatcatcacttgtagaacaattaaagtaactattgaaaaagtgacagggcaacactgtggagtcactgtccatactcggttagtagtacgtac |
45546992 |
T |
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| Q |
101 |
ctctttccacaccgtccaaagtccacaggagcagttatgtctgctgatcgacataaacaaccaattataggactccacgtgtcacaaataatactcaaca |
200 |
Q |
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| T |
45546991 |
ctctttccacaccgtccaaagtccacaggagcagttatgtctgctgatcgacataaacaaccaattataggactccacgtgtcacaaataatactcaaca |
45546892 |
T |
|
| Q |
201 |
agtgtcaaatgatagttattttgtcgttatgtgccacgtgtctccagtcatatgaaatgcaaaatgg---------------ctcatgttttgtttctct |
285 |
Q |
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| T |
45546891 |
agtgtcaaatgatagtta-tttgtcgttatgtgccacgtgtctccagtcatatgaaatgcaaaatggtattggtgacactatttcatgttttgtttctct |
45546793 |
T |
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| Q |
286 |
ctataaagtagaaccttttgttcttctacattatagcagtttcttttcttcacaatttataatcatggattcaagagttgttcatagtcatgtggaaggg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546792 |
ctataaagtagaaccttttgttcttctacattatagcagtttcttttcttcacaatttataatcatggattcaagagttgttcatagtcatgtggaaggg |
45546693 |
T |
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| Q |
386 |
gagaacgatgaacaaaactcacctaacgttgaaccatatccaggtatcat |
435 |
Q |
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| T |
45546692 |
gagaacgatgaacaaaactcacctaacgttgaaccatatccaggtatcat |
45546643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 45551961 - 45551907
Alignment:
| Q |
337 |
acaatttataatcatggattcaagagttgttcatagtcatgtggaaggggagaac |
391 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
45551961 |
acaatttacaatcatggattcaagagttgttcatagtcatgttgaagaggagaac |
45551907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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