View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_high_6 (Length: 336)
Name: NF3158_high_6
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 23706282 - 23706591
Alignment:
| Q |
11 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23706282 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
23706381 |
T |
|
| Q |
111 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23706382 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
23706481 |
T |
|
| Q |
211 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccgggagaaacaaaccttccaattgagatcagtttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23706482 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccggtagaaacaaaccttccaattgagatcagtttt |
23706581 |
T |
|
| Q |
311 |
atatatttga |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
23706582 |
atatatttga |
23706591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 23724738 - 23725047
Alignment:
| Q |
11 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23724738 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
23724837 |
T |
|
| Q |
111 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23724838 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
23724937 |
T |
|
| Q |
211 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccgggagaaacaaaccttccaattgagatcagtttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23724938 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccggtagaaacaaaccttccaattgagatcagtttt |
23725037 |
T |
|
| Q |
311 |
atatatttga |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
23725038 |
atatatttga |
23725047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 23743194 - 23743503
Alignment:
| Q |
11 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23743194 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
23743293 |
T |
|
| Q |
111 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23743294 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
23743393 |
T |
|
| Q |
211 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccgggagaaacaaaccttccaattgagatcagtttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
23743394 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccggtagaaacaaaccttccaattgagatcagtttt |
23743493 |
T |
|
| Q |
311 |
atatatttga |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
23743494 |
atatatttga |
23743503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 23772739 - 23773048
Alignment:
| Q |
11 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23772739 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
23772838 |
T |
|
| Q |
111 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23772839 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatccatagatcatgca |
23772938 |
T |
|
| Q |
211 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccgggagaaacaaaccttccaattgagatcagtttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
23772939 |
caaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccggtagaaacaaaccttccaattgagatcagtttt |
23773038 |
T |
|
| Q |
311 |
atatatttga |
320 |
Q |
| |
|
|||||||||| |
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|
| T |
23773039 |
atatatttga |
23773048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 4135045 - 4135339
Alignment:
| Q |
11 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaaggatggcacagctacaacaattctgcat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | || |
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|
| T |
4135045 |
aaagaagaaaagtctgaacctaaaggcaacaatggaagccaaaacaattctgaattttcacagatcacttaag-atggcacaaccacaacaattcggaat |
4135143 |
T |
|
| Q |
111 |
ttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgat--tatatatatccatagatcatg |
208 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4135144 |
ttgtttatcatcgagaatcgattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattgattatatatatatccatagatc--- |
4135240 |
T |
|
| Q |
209 |
cacaaggcagataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccgggagaaacaaaccttccaattgagatcagtt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4135241 |
-------------atgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccggtagaaacaaaccttccaattgagatcagtt |
4135327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 22419933 - 22420029
Alignment:
| Q |
89 |
cacagctacaacaattctgcatttgtttatcatggagaatcaattaccaattcaattaaattcaaaggatttccattttatcaaaaccataaaattg |
185 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22419933 |
cacagccacaacgattctggatttgtttatcacggagaattgactaccaattcaattaaatttaaaggattttcattttaccaaaaccataaaattg |
22420029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 22420102 - 22420174
Alignment:
| Q |
218 |
gataatgcaccaaaccgataacatcttagaaagtcaattcttaaacctaaaactccaccgggagaaacaaacc |
290 |
Q |
| |
|
|||||||||||||| || ||||| | |||||||||||||| | |||||||| ||||| || ||||| ||||| |
|
|
| T |
22420102 |
gataatgcaccaaatggacaacatttcagaaagtcaattctcacacctaaaattccactggtagaaataaacc |
22420174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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