View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_low_1 (Length: 541)
Name: NF3158_low_1
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 2173890 - 2174099
Alignment:
| Q |
59 |
tttggtaaaatcaatctacattcatctttgtaggaacttcttctctccttctttggtgggcgg--ttgggagctcttggctcaattgcgggaagccatgc |
156 |
Q |
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| T |
2173890 |
tttggtaaaatcaatctacattcatctttgtaggaacttcttctctccttctttggtggggggggtagggagctcttggctcaattgcgggaagccatgc |
2173989 |
T |
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| Q |
157 |
ccccatcaaaggtagtaannnnnnnaattgaaataattgttggattccttaccaacaagattgattgaacttggcgaggcgaggggtctttcgaaaggat |
256 |
Q |
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| T |
2173990 |
ccc-atcaaaggtagtaa---------ttgaaataattgttggattccttaccaacaagattgattgaacttggcgaggcgaggggtctttcgaaaggat |
2174079 |
T |
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| Q |
257 |
gggctagaaaattgtatttg |
276 |
Q |
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| T |
2174080 |
gggctagaaaattgtatttg |
2174099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 2174542 - 2174679
Alignment:
| Q |
303 |
gtatcacttttatttctccttttctaataaaataaatcttgctattaaaacactaaagtataggaagtttgagttgaaatgattttgaatcatttgtgac |
402 |
Q |
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| T |
2174542 |
gtatcacttttatttctccttttctaataaaatctatcttgctattaaaacactaaagtataggaagtttgagttgaaaagattttgaatcattggtgac |
2174641 |
T |
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| Q |
403 |
ggctatcgaaaccaaggtgttcctcactcatactggag |
440 |
Q |
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| T |
2174642 |
cgctatcgaaaccaaggtgttcctcactcatactggag |
2174679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 2175342 - 2175400
Alignment:
| Q |
436 |
tggagaaacattgatcagcttaaggcagagacaaggtaaggtaaacaaacagcccattt |
494 |
Q |
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| T |
2175342 |
tggagaaacattgatcagcttaaggcagagacaaggtaaggtaaacaaacagcccattt |
2175400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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