View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3158_low_11 (Length: 310)

Name: NF3158_low_11
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3158_low_11
NF3158_low_11
[»] chr1 (2 HSPs)
chr1 (11-292)||(46594827-46595108)
chr1 (47-161)||(32774127-32774241)
[»] chr8 (5 HSPs)
chr8 (18-210)||(37269813-37270006)
chr8 (64-221)||(42941151-42941308)
chr8 (17-163)||(36404034-36404180)
chr8 (71-123)||(8273845-8273897)
chr8 (45-161)||(9936367-9936483)
[»] scaffold0760 (1 HSPs)
scaffold0760 (47-200)||(1722-1875)
[»] chr6 (5 HSPs)
chr6 (27-221)||(1034210-1034405)
chr6 (67-169)||(10232725-10232827)
chr6 (24-140)||(2920913-2921029)
chr6 (24-157)||(18246523-18246656)
chr6 (47-125)||(32548918-32548995)
[»] scaffold0495 (1 HSPs)
scaffold0495 (67-169)||(9448-9550)
[»] chr3 (3 HSPs)
chr3 (23-125)||(53553627-53553728)
chr3 (24-157)||(1259270-1259403)
chr3 (24-157)||(37242558-37242691)
[»] chr4 (3 HSPs)
chr4 (24-157)||(16989581-16989714)
chr4 (45-161)||(2282214-2282330)
chr4 (84-221)||(4913390-4913527)
[»] chr2 (3 HSPs)
chr2 (40-117)||(33858647-33858724)
chr2 (71-124)||(1479469-1479522)
chr2 (79-211)||(11272451-11272583)
[»] chr7 (3 HSPs)
chr7 (73-157)||(31234771-31234855)
chr7 (45-161)||(42460099-42460215)
chr7 (118-179)||(21245264-21245325)
[»] chr5 (1 HSPs)
chr5 (71-221)||(36988940-36989090)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 46594827 - 46595108
Alignment:
Q  11 cagagaccctacagcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  46594827 cagagaccctacagcagatccaaaaagaaagccactttcatctcctatttaaacattctttaggatttcaagtccactcgtaaaagagaaaggaagctat 46594926  T
Q  111 cttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcctcgcatttctt 210  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  46594927 gttaagtctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaaaaattctcgcatttctt 46595026  T
Q  211 ttcttctaaattgagaatttcatttaccacttttgtattctaaaattatgcatagcgctttgaaggttgaagtgactttaat 292  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  46595027 ttcttttaaattgagaatttcatttaccacttttgtattctaaaattatgtatagcgctttgaaggttgaagcgactttaat 46595108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 32774127 - 32774241
Alignment:
Q  47 ttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccac 146  Q
    ||||||| |||||||  || ||| ||||||| ||||||||||||||||||||||| || |||||||| |||||||||||   ||||| |||||| ||| |    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  147 tttaatttcatccac 161  Q
    ||| || ||||||||    
T  32774227 tttgatctcatccac 32774241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 37269813 - 37270006
Alignment:
Q  18 cctacagcagatccaaaaa-gaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaa 116  Q
    |||| |||||||||||||| || ||||   ||||||| ||||| |  |||||| ||||||| |||||||||||||||||||||||||||||||||||||     
T  37269813 cctatagcagatccaaaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaag 37269912  T
Q  117 tctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcctcgcatttctt 210  Q
    ||||||||| |||||||||||||| |  ||||| ||||| |||||||||||||  |||||||| |||||||  |||| ||||||||||||||||    
T  37269913 tctactcaacacccaaaaccaagatataactttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttctt 37270006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 42941308 - 42941151
Alignment:
Q  64 cattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaa 163  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||| |  ||||| ||||| |||||||    
T  42941308 cattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaactttgatttcctccacaa 42941209  T
Q  164 tctcataaacatcctttgcttgatcattaataatcctcgcatttcttttcttctaaat 221  Q
    ||||||  |||||||| |||||||  |||| ||||||||||||| ||| |||| ||||    
T  42941208 tctcatccacatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaat 42941151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 36404034 - 36404180
Alignment:
Q  17 ccctacagcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaa 116  Q
    ||||| |||||| | ||||| | || ||| ||||||| |||||||| |||||| ||||||| ||||||||||| || ||||||||||||||||||||||     
T  36404034 ccctatagcagagctaaaaaaacagtcaccttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaag 36404133  T
Q  117 tctactcaatacccaaaaccaagacaccactttaatttcatccacaa 163  Q
    |||||||||  ||||||||||||| |||||||| ||||||| |||||    
T  36404134 tctactcaacgcccaaaaccaagataccactttgatttcattcacaa 36404180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 8273897 - 8273845
Alignment:
Q  71 taggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 123  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||    
T  8273897 taggattccaaatccactcataaaagaggaaagaagctatctttaatctactc 8273845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 9936483 - 9936367
Alignment:
Q  45 ctttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacacc 144  Q
    ||||||||| |||||||  || | | |||| || ||||||||||||||||||||||| || |||||||| | ||| ||||| | ||| | ||||||||||    
T  9936483 ctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccacacccaagacacc 9936384  T
Q  145 actttaatttcatccac 161  Q
     ||| ||| ||||||||    
T  9936383 gcttcaatctcatccac 9936367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 1722 - 1875
Alignment:
Q  47 ttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccac 146  Q
    ||||||| ||||| |  |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |  ||    
T  1722 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataac 1821  T
Q  147 tttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcct 200  Q
    ||| ||||| |||||||||||||  |||||||| |||||||  |||| ||||||    
T  1822 tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcct 1875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 1034405 - 1034210
Alignment:
Q  27 gatccaaaaagaaagccactttcatctcc-tatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaa 125  Q
    |||||||||||| |||  ||||||||||| ||||||  || ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||    
T  1034405 gatccaaaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaa 1034306  T
Q  126 tacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcctcgcatttcttttcttctaaat 221  Q
       ||||| |||||| ||| ||||||| |||||||| ||||||  ||| ||||| ||||  | ||||| |||||| |||||||||| |||| ||||    
T  1034305 cgtccaaacccaagaaaccgctttaatctcatccactatctcaccaacctccttcgctttgttattaaaaatccttgcatttctttccttccaaat 1034210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 10232827 - 10232725
Alignment:
Q  67 tctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatct 166  Q
    |||||| |||| ||| ||||||||||||||||||| ||||||||||| | |||||||||  | |||||| ||| |||||||||||||||||||||||| |    
T  10232827 tctttaagattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaaagctcaaaactaagtcaccactttaatttcatccacaattt 10232728  T
Q  167 cat 169  Q
    |||    
T  10232727 cat 10232725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 2920913 - 2921029
Alignment:
Q  24 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 123  Q
    |||||| ||||||||||||||| ||||||| || ||||  ||||||   ||||| || |||||||||||||||||||| ||||||||||| || ||||||    
T  2920913 gcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatctttaacctactc 2921012  T
Q  124 aatacccaaaaccaaga 140  Q
    || | ||||| ||||||    
T  2921013 aacatccaaacccaaga 2921029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 18246523 - 18246656
Alignment:
Q  24 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 123  Q
    |||||| |||||||| |||| | ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  18246523 gcagattcaaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 18246622  T
Q  124 aatacccaaaaccaagacaccactttaatttcat 157  Q
    || | ||||| |||||| | | ||||||||||||    
T  18246623 aacatccaaacccaagaaagcgctttaatttcat 18246656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 32548995 - 32548918
Alignment:
Q  47 ttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaa 125  Q
    ||||||| |||||||  |||| | |||||||  ||||||||| ||||||||| ||| |||||||||||| |||||||||    
T  32548995 ttcatcttctatttagacattatctaggattctaagtccacttataaaagagaaag-aagctatcttaagtctactcaa 32548918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 9550 - 9448
Alignment:
Q  67 tctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatct 166  Q
    |||||| |||| ||| ||||||||||||||||||| ||||||||||| | |||||||||  | |||||| ||| |||||||||||||||||||||||| |    
T  9550 tctttaagattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaaagctcaaaactaagtcaccactttaatttcatccacaattt 9451  T
Q  167 cat 169  Q
    |||    
T  9450 cat 9448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 53553627 - 53553728
Alignment:
Q  23 agcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctact 122  Q
    |||||||||||||| | |||  |||||||||||||||||  || ||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  53553627 agcagatccaaaaa-acagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctact 53553725  T
Q  123 caa 125  Q
    |||    
T  53553726 caa 53553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 1259270 - 1259403
Alignment:
Q  24 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 123  Q
    |||||| |||||||| ||||   ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  1259270 gcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 1259369  T
Q  124 aatacccaaaaccaagacaccactttaatttcat 157  Q
    || | ||||| |||||| | | ||||||||||||    
T  1259370 aacatccaaacccaagaaagcgctttaatttcat 1259403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 37242558 - 37242691
Alignment:
Q  24 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 123  Q
    |||||| |||||||| ||||   ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  37242558 gcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 37242657  T
Q  124 aatacccaaaaccaagacaccactttaatttcat 157  Q
    || | ||||| |||||| | | ||||||||||||    
T  37242658 aacatccaaacccaagaaagcgctttaatttcat 37242691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 16989714 - 16989581
Alignment:
Q  24 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 123  Q
    |||||| |||||||| |||| | ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  16989714 gcagattcaaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 16989615  T
Q  124 aatacccaaaaccaagacaccactttaatttcat 157  Q
    || | ||||| |||||| | | ||||||||||||    
T  16989614 aacatccaaacccaagaaagcgctttaatttcat 16989581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 2282330 - 2282214
Alignment:
Q  45 ctttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacacc 144  Q
    ||||||||| |||||||  |||||  |||| ||  ||||||| ||||| |||||||| || ||| |||| ||||||||||||  ||| | |||||| |||    
T  2282330 ctttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaacc 2282231  T
Q  145 actttaatttcatccac 161  Q
     ||||||| ||||||||    
T  2282230 gctttaatctcatccac 2282214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 4913390 - 4913527
Alignment:
Q  84 ccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgct 183  Q
    |||||| ||||||||  | ||||||||| | |||||||||||   |||| ||||||||||||||||||| | ||| || | ||||| || || ||    |    
T  4913390 ccactcgtaaaagagacaagaagctatcctcaatctactcaaagaccaacaccaagacaccactttaatgttatcaaccacctcatcaaaatgctgaaat 4913489  T
Q  184 tgatcattaataatcctcgcatttcttttcttctaaat 221  Q
    ||||  |||| ||||||||||||||||| |||| ||||    
T  4913490 tgattcttaaaaatcctcgcatttctttccttccaaat 4913527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 33858647 - 33858724
Alignment:
Q  40 agccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaat 117  Q
    |||||| ||||||| |||||||  ||||||  |||||| |||||||||||||| ||||||||||||||| ||||||||    
T  33858647 agccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagctttcttaaat 33858724  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 1479469 - 1479522
Alignment:
Q  71 taggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactca 124  Q
    ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||    
T  1479469 taggattccaagtccactcataaaagaggaacgatgctatctttaatctactca 1479522  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 11272583 - 11272451
Alignment:
Q  79 caagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcct 178  Q
    ||||| |||||||| |||||||| ||||||||||| || ||||||||   ||||| |||||| ||| |||| ||||||| |||||| || |  || ||||    
T  11272583 caagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaaccgctttgatttcattcacaatttcctccacttcct 11272484  T
Q  179 ttgcttgatcattaataatcctcgcatttcttt 211  Q
    ||  ||||| ||| | |||||| ||||||||||    
T  11272483 ttctttgattattgaaaatccttgcatttcttt 11272451  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 31234771 - 31234855
Alignment:
Q  73 ggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcat 157  Q
    ||||| |||||||||||||| |||||||| ||||||||||| || |||||||| | ||||| |||||| | | ||||||||||||    
T  31234771 ggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcat 31234855  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 42460099 - 42460215
Alignment:
Q  45 ctttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacacc 144  Q
    ||||||||| |||||||  || ||| ||||||| |||||| |||||||||||||||| || |||||||| |  || |||| || ||| | ||||||||||    
T  42460099 ctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccacacccaagacacc 42460198  T
Q  145 actttaatttcatccac 161  Q
     ||||||| ||||||||    
T  42460199 gctttaatctcatccac 42460215  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 21245264 - 21245325
Alignment:
Q  118 ctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctt 179  Q
    |||||||| |||||||||||||||| |||||| ||||| || | |||||||| ||| |||||    
T  21245264 ctactcaaaacccaaaaccaagacaacacttttatttcgtcgataatctcatcaacctcctt 21245325  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 36989090 - 36988940
Alignment:
Q  71 taggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcata 170  Q
    ||||||| || ||||||| ||| |||||||| ||||||||||| || |||||||| | ||||| |||||| ||| |||| ||||| | ||| || || |     
T  36989090 taggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcactatttcctc 36988991  T
Q  171 aacatcctttgcttgatcattaataatcctcgcatttcttttcttctaaat 221  Q
     |||| |||   | ||| ||||| ||||||||||||||||| |||| ||||    
T  36988990 cacattcttccttagattattaaaaatcctcgcatttctttccttccaaat 36988940  T

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