View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3158_low_13 (Length: 284)

Name: NF3158_low_13
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3158_low_13
NF3158_low_13
[»] chr6 (16 HSPs)
chr6 (1-274)||(34898644-34898915)
chr6 (116-227)||(1485125-1485235)
chr6 (67-187)||(34620921-34621041)
chr6 (67-187)||(34748358-34748478)
chr6 (66-180)||(882728-882842)
chr6 (79-187)||(34027359-34027467)
chr6 (116-187)||(31305826-31305897)
chr6 (143-187)||(2234550-2234595)
chr6 (149-227)||(30926790-30926868)
chr6 (79-183)||(25388116-25388219)
chr6 (116-187)||(4910943-4911014)
chr6 (64-153)||(434163-434253)
chr6 (57-111)||(19601372-19601426)
chr6 (69-111)||(34026417-34026459)
chr6 (131-187)||(852567-852623)
chr6 (127-187)||(17225887-17225947)
[»] chr7 (11 HSPs)
chr7 (55-227)||(27571858-27572029)
chr7 (69-227)||(38123598-38123755)
chr7 (64-187)||(45557400-45557523)
chr7 (57-185)||(40561678-40561806)
chr7 (57-167)||(33853404-33853514)
chr7 (63-187)||(22310385-22310509)
chr7 (117-183)||(40795969-40796035)
chr7 (79-183)||(12306760-12306866)
chr7 (116-185)||(41788353-41788422)
chr7 (57-86)||(45823307-45823336)
chr7 (79-187)||(40491613-40491721)
[»] chr4 (12 HSPs)
chr4 (55-170)||(33843763-33843878)
chr4 (116-187)||(55927749-55927820)
chr4 (141-187)||(4243422-4243468)
chr4 (147-187)||(33844012-33844052)
chr4 (116-187)||(8604601-8604672)
chr4 (60-111)||(48045675-48045726)
chr4 (141-187)||(2207114-2207160)
chr4 (121-187)||(32818354-32818420)
chr4 (117-162)||(25319108-25319153)
chr4 (141-178)||(32100336-32100373)
chr4 (127-187)||(10185229-10185289)
chr4 (127-186)||(16551993-16552050)
[»] chr2 (11 HSPs)
chr2 (61-187)||(1976788-1976916)
chr2 (116-187)||(44439289-44439360)
chr2 (116-162)||(15220840-15220886)
chr2 (116-187)||(16013683-16013760)
chr2 (115-185)||(37420171-37420243)
chr2 (127-221)||(42982546-42982639)
chr2 (48-86)||(11650668-11650706)
chr2 (141-187)||(42741012-42741058)
chr2 (115-160)||(40401621-40401666)
chr2 (57-101)||(3476349-3476393)
chr2 (116-160)||(4908852-4908896)
[»] scaffold0361 (1 HSPs)
scaffold0361 (116-187)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (59-183)||(36302222-36302348)
chr3 (62-187)||(46853459-46853584)
chr3 (141-218)||(30301002-30301079)
chr3 (48-187)||(51285605-51285744)
chr3 (119-227)||(40147832-40147939)
chr3 (141-227)||(35058357-35058443)
chr3 (118-187)||(35264392-35264461)
chr3 (116-220)||(27266773-27266876)
chr3 (121-187)||(31708223-31708289)
chr3 (61-162)||(5406964-5407061)
chr3 (128-187)||(37335025-37335084)
chr3 (61-180)||(40136096-40136214)
chr3 (77-187)||(3776557-3776667)
chr3 (116-186)||(35253446-35253516)
chr3 (116-177)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (116-221)||(48548993-48549095)
chr1 (62-177)||(1233350-1233465)
chr1 (141-183)||(28287340-28287382)
chr1 (122-187)||(213522-213587)
chr1 (115-180)||(1514385-1514450)
chr1 (57-158)||(6932104-6932205)
chr1 (141-227)||(8381962-8382047)
chr1 (141-185)||(20026168-20026212)
chr1 (141-185)||(24587949-24587993)
chr1 (115-179)||(52263625-52263689)
chr1 (116-187)||(4458421-4458492)
chr1 (116-187)||(34915101-34915172)
chr1 (141-187)||(7790646-7790692)
chr1 (142-187)||(47892393-47892438)
chr1 (119-187)||(3016197-3016265)
chr1 (127-187)||(10324928-10324988)
chr1 (147-187)||(17284131-17284171)
chr1 (116-187)||(30557539-30557608)
chr1 (131-183)||(30850393-30850445)
chr1 (89-153)||(35961437-35961501)
chr1 (128-184)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (78-183)||(16972005-16972110)
chr8 (116-183)||(32927931-32927998)
chr8 (116-187)||(35495295-35495366)
chr8 (141-187)||(13384658-13384704)
chr8 (116-187)||(32767422-32767495)
chr8 (62-108)||(38386430-38386476)
chr8 (58-158)||(2778577-2778677)
chr8 (79-187)||(26100088-26100196)
chr8 (57-85)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (62-187)||(15368508-15368632)
chr5 (116-184)||(8591519-8591587)
chr5 (81-168)||(35138967-35139054)
chr5 (117-187)||(36639972-36640042)
chr5 (140-177)||(7925431-7925468)
chr5 (57-102)||(9952555-9952600)
chr5 (142-186)||(9185020-9185064)
chr5 (118-162)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34898915 - 34898644
Alignment:
Q  1 ctacggtaggcctctccctctagtagtcttttcaaaattaagtgtatgtttggcgttgacaaaaattgattttgattgaattgattctggcttaaagtga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34898915 ctacggtaggcctctccctctagtagtattttcaaaattaagtgtatgtttggcgttgacaaaaattgattttgattgaattgattctggc-taaagtga 34898817  T
Q  101 gtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaa 200  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||    
T  34898816 gtcgaaggtaatacaatttatg-ttcgatacatttgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaa 34898718  T
Q  201 tttctagcttcaagtagaatcgattctcaccacttatttgctaacttactgtttcttcgtctaggtgatctctg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34898717 tttctagcttcaagtagaatcgattctcaccacttatttgctaatttactgtttcttcgtctaggtgatctctg 34898644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 1485125 - 1485235
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 215  Q
    ||||| |||| |||||| |  ||| |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| |||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat-caaaagctccaatttctagattcaagt 1485223  T
Q  216 agaatcgattct 227  Q
    |||||| |||||    
T  1485224 agaatcaattct 1485235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 34621041 - 34620921
Alignment:
Q  67 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 166  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34621041 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34620942  T
Q  167 tgttaaaatcaattctagaat 187  Q
    ||| |||||||||||||||||    
T  34620941 tgtaaaaatcaattctagaat 34620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 34748478 - 34748358
Alignment:
Q  67 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 166  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34748478 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34748379  T
Q  167 tgttaaaatcaattctagaat 187  Q
    ||| |||||||||||||||||    
T  34748378 tgtaaaaatcaattctagaat 34748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 882842 - 882728
Alignment:
Q  66 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 165  Q
    |||| ||||| |||||||||||| | | ||| ||||| |||| ||| |  |||||||||| ||||||||| ||  |||||||||| ||||||||||| ||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T
Q  166 gtgttaaaatcaatt 180  Q
     ||| ||||||||||    
T  882742 atgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 34027359 - 34027467
Alignment:
Q  79 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 178  Q
    |||||||| ||||| ||||||||| |||  | | ||  |||||| || |||| |||| ||| | ||||||||||| |||||||| |||||| ||||||||    
T  34027359 aattgattgtggctaaaagtgagttgaaagtgagacggtttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaa 34027458  T
Q  179 ttctagaat 187  Q
    |||||||||    
T  34027459 ttctagaat 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 31305826 - 31305897
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| |||| |||  ||| |||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaat 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 2234595 - 2234550
Alignment:
Q  143 agtgagttgaacaa-taaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2234595 agtgagttgaacaaataaatttgagtgttaaaatcaattctagaat 2234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 30926790 - 30926868
Alignment:
Q  149 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaag-tagaatcgattct 227  Q
    |||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||| ||||||| |||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat-aaaaaactccaatttctagcttcaagttagaatccattct 30926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 25388219 - 25388116
Alignment:
Q  79 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 178  Q
    ||||||||||| |||||| ||||| | || |||||  |||||  ||| |||| |||  ||| |||||||||||| ||||||||| |||||| ||||||||    
T  25388219 aattgattctgacttaaaatgagttggaggtaatatgatttacatttggatatatttatgtaaaagtgagttga-caataaatttgagtgtcaaaatcaa 25388121  T
Q  179 ttcta 183  Q
    |||||    
T  25388120 ttcta 25388116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 4911014 - 4910943
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| ||||||||  ||| ||||||||| |||| ||||||| |  ||| |||||||||||||||||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaat 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 434163 - 434253
Alignment:
Q  64 aattgattttga-ttgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 153  Q
    |||||||||||| |||||| |||| ||||| ||||||||| | || ||| |  |||| ||||| |||| |||||||| |||||||||||||    
T  434163 aattgattttgagttgaatggattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaa 434253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 19601372 - 19601426
Alignment:
Q  57 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 111  Q
    |||||||||||||||||||||||||||||| |  || | ||||||| ||||||||    
T  19601372 tgacaaaaattgattttgattgaattgattttaactaatagtgagttgaagataa 19601426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 34026417 - 34026459
Alignment:
Q  69 attttgattgaattgattctggcttaaagtgagtcgaagataa 111  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  34026417 attttgagtgaattgattctggctaaaagtgagttgaagataa 34026459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 852623 - 852567
Alignment:
Q  131 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||| ||| |||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaat 852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 17225947 - 17225887
Alignment:
Q  127 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||| ||| ||| |||||||||| ||||||| |  ||| |||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaat 17225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 27572029 - 27571858
Alignment:
Q  55 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 154  Q
    ||||||||||||||||||||  |||||||||| ||||| |||||||||  ||| ||| |  ||||||| || ||||||||  ||| || ||||||||||     
T  27572029 gttgacaaaaattgattttgggtgaattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaat 27571930  T
Q  155 aataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 227  Q
    |||||| | ||||||||||||||||||||||||       |||||||||||| |||||||||||||| |||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaat-caaaagctccaatttctaacttcaagtagaatcaattct 27571858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 38123598 - 38123755
Alignment:
Q  69 attttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 168  Q
    ||||||| | |||||||| || || ||| ||||| |||| |||   ||||| ||||  || |||||| ||| |||||||||||| ||||||||| |||||    
T  38123598 attttgagtaaattgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg 38123697  T
Q  169 ttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 227  Q
    | |||||||||||||||||       || |||||||||||||||||||||||| |||||    
T  38123698 taaaaatcaattctagaat-tagaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 45557523 - 45557400
Alignment:
Q  64 aattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattc 163  Q
    |||||||||||| ||||||||||||| || ||||||||| |||| |||    |||| ||||| ||||||||| ||| |||||||||||| | | |||||     
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaattt 45557424  T
Q  164 gagtgttaaaatcaattctagaat 187  Q
    | |||| ||||||||| |||||||    
T  45557423 gtgtgtaaaaatcaatcctagaat 45557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 40561678 - 40561806
Alignment:
Q  57 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 156  Q
    |||||||| |||||||||| |||||||||||| |   ||| ||||| |||  |||    |||||||||| ||||||||| ||| ||||||||||||||||    
T  40561678 tgacaaaagttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaa 40561777  T
Q  157 taaattcgagtgttaaaatcaattctaga 185  Q
    || ||| ||||||  |||| |||||||||    
T  40561778 tatatttgagtgtataaattaattctaga 40561806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 33853404 - 33853514
Alignment:
Q  57 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 156  Q
    ||||||||||||||||| | |||||||||||||||| | ||||||| |||| |||    |||||||||| ||||||||| ||| ||||  || || ||||    
T  33853404 tgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaagcaagctggacaa 33853503  T
Q  157 taaattcgagt 167  Q
    |||||| ||||    
T  33853504 taaatttgagt 33853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 22310385 - 22310509
Alignment:
Q  63 aaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 162  Q
    ||||||||||||| || ||||| | |||   ||| ||||| |||||||| |  |||||||||| |||||||||  || ||||||| ||||| ||||||||    
T  22310385 aaattgattttgagtggattgagtttggtaaaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaaaataaatt 22310484  T
Q  163 cgagtgttaaaatcaattctagaat 187  Q
      ||||| ||||| |||||||||||    
T  22310485 taagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 40795969 - 40796035
Alignment:
Q  117 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 183  Q
    |||||| || ||||||||| ||| ||||||| ||||| | |||||| ||||||||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattcta 40796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 12306866 - 12306760
Alignment:
Q  79 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa--taaattcgagtgttaaaatc 176  Q
    |||||||||||||| ||||||||| ||||||||    |||||||||| | || |||| ||| ||||||||||||| |   | |||| |||||| ||||||    
T  12306866 aattgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatatagtgaatttgagtgtaaaaatc 12306767  T
Q  177 aattcta 183  Q
    |||||||    
T  12306766 aattcta 12306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 41788422 - 41788353
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 185  Q
    ||||||||||  |||||||  | | |||||||||||||||  ||||| ||||||||||||||||| ||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 45823336 - 45823307
Alignment:
Q  57 tgacaaaaattgattttgattgaattgatt 86  Q
    ||||||||||||||||||||||||||||||    
T  45823336 tgacaaaaattgattttgattgaattgatt 45823307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 40491721 - 40491613
Alignment:
Q  79 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 178  Q
    |||||||| || || ||||||||| |||| |||    |||||| ||| ||||||||| ||| |||||||||| |||  |||||| | |||| ||| ||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaa 40491622  T
Q  179 ttctagaat 187  Q
    |||||||||    
T  40491621 ttctagaat 40491613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 33843878 - 33843763
Alignment:
Q  55 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 154  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | |  |||    |||||||||| |||| |||| ||| | ||||||||||||    
T  33843878 gttgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaac 33843779  T
Q  155 aataaattcgagtgtt 170  Q
    ||||||||||||||||    
T  33843778 aataaattcgagtgtt 33843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 55927749 - 55927820
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||| |  ||||||||||||||    
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaat 55927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 4243468 - 4243422
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  4243468 aaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 33844052 - 33844012
Alignment:
Q  147 agttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 8604601 - 8604672
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| ||||||||| ||| ||||||  || ||| ||||||| | |||| |||||||||||||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaat 8604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 48045675 - 48045726
Alignment:
Q  60 caaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 111  Q
    |||||||||||||||| | |||||||||||||| ||| ||||| ||||||||    
T  48045675 caaaaattgattttgagtaaattgattctggctaaaactgagttgaagataa 48045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 2207160 - 2207114
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  2207160 aaagtgagttgaaccataaattggagtgttgaaatcaattatagaat 2207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 32818354 - 32818420
Alignment:
Q  121 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||| ||||||||| ||| ||||| |||||||| ||||||| | |||  |||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaat 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 25319153 - 25319108
Alignment:
Q  117 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 162  Q
    ||||||||||||||||||   || ||||||||||||||||||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatt 25319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 32100373 - 32100336
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaa 178  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32100373 aaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 10185289 - 10185229
Alignment:
Q  127 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||  ||| |||||||||| ||||||||||| |||||| || ||||||| ||||||    
T  10185289 gatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaat 10185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 16552050 - 16551993
Alignment:
Q  127 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 186  Q
    ||||||||| ||| |||||||||||||| |||||||   |||| ||||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaa 16551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 1976788 - 1976916
Alignment:
Q  61 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 160  Q
    |||||||| |||||| ||||||||||||||||  || ||||| |||| |||  | | |||||||| ||||||||| ||| |||||||||| |||||||||    
T  1976788 aaaaattgtttttgagtgaattgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaa 1976887  T
Q  161 ttcgagtgt--taaaatcaattctagaat 187  Q
    || ||||||   |||||||||||||||||    
T  1976888 tttgagtgtaaaaaaatcaattctagaat 1976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 44439360 - 44439289
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| ||||  ||  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 162  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 16013683 - 16013760
Alignment:
Q  116 atttatgtttcgatacattcgtgt------taaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| |||||||||||||      ||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  16013683 atttatgtttggatacattcgtgtaaactgtaaagtgagttgaccaataaatttgagtgtaaaaatcatttctagaat 16013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 37420171 - 37420243
Alignment:
Q  115 aatttatgtttcgatacattcgt--gttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 185  Q
    |||||||||||| ||| || |||  || ||||||||||||| |||||||| |||||| |||||||||||||||    
T  37420171 aatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 42982639 - 42982546
Alignment:
Q  127 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatc 221  Q
    ||||||||| ||| ||||||||||| | |||||||| | |||| |||||||||||| ||||       || ||||||||||||||||||||||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaat-caaaagctacaatttctagcttcaagtagaatc 42982546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 11650668 - 11650706
Alignment:
Q  48 gtttggcgttgacaaaaattgattttgattgaattgatt 86  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  11650668 gttttgcgttgacaaaaattgattttgagtgaattgatt 11650706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 42741058 - 42741012
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||||||    
T  42741058 aaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaat 42741012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 40401621 - 40401666
Alignment:
Q  115 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 160  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 3476349 - 3476393
Alignment:
Q  57 tgacaaaaattgattttgattgaattgattctggcttaaagtgag 101  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||    
T  3476349 tgacaaaaattgattttaagtgaattgattctggataaaagtgag 3476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 4908896 - 4908852
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 160  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  4908896 atttatgtttggatacattcatgttaaagtggattgaacaataaa 4908852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 14093 - 14164
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaat 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 36302348 - 36302222
Alignment:
Q  59 acaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataataca--atttatgtttcgatacattcgtgttaaagtgagttgaacaa 156  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||| |||||||| | |  ||| |||| | ||| ||||| ||| ||||||||||||||||    
T  36302348 acaaaaattgattttgagtgaattgattccggttaaaattgagttgaagataaaaaatgattaatgtgtggattcattcatgtaaaagtgagttgaacaa 36302249  T
Q  157 taaattcgagtgttaaaatcaattcta 183  Q
    ||||||  |||| ||||||||||||||    
T  36302248 taaatttaagtgctaaaatcaattcta 36302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 46853459 - 46853584
Alignment:
Q  62 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 161  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| |||| |||    ||||||||   |||| |||  ||| |||||||||||||||||||||    
T  46853459 aaaattgatcttgagtgaattgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaat 46853558  T
Q  162 tcgagtgttaaaatcaattctagaat 187  Q
    | ||||||||||||||||||||||||    
T  46853559 ttgagtgttaaaatcaattctagaat 46853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 30301002 - 30301079
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 218  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| ||||    
T  30301002 aaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaataga 30301079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 51285744 - 51285605
Alignment:
Q  48 gtttggcgttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtga 147  Q
    |||| ||| ||| ||||||||||||||| |||||| ||| ||||| ||||||||| |||  |||   |||| ||| || ||||||||| ||| |||| |     
T  51285744 gttttgcggtgagaaaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgg 51285645  T
Q  148 gttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||| ||||| ||||| |||||  |||||||||||||||||    
T  51285644 gttaaacaacaaatttgagtgcaaaaatcaattctagaat 51285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 40147832 - 40147939
Alignment:
Q  119 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 218  Q
    ||||||| ||||||||  ||| |||||||||||||  |||||||| |||||| ||||||||||||||||       |||||| ||||||||| |||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaat-caaaagctccaaattctagcttgaagtaga 40147930  T
Q  219 atcgattct 227  Q
    ||| |||||    
T  40147931 atcaattct 40147939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 35058443 - 35058357
Alignment:
Q  141 aaagtgagttgaacaataa-attcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 227  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||       ||| ||||||||||| ||||||||||| |||||    
T  35058443 aaagtgagttgaacaataatatttgagtgttaaaatcaattctagaat-caaaagctcgaatttctagctccaagtagaatcaattct 35058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 35264392 - 35264461
Alignment:
Q  118 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||| | ||||||| ||| ||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 27266773 - 27266876
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 215  Q
    |||||||||| ||||  ||| ||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||       || ||||||||||||||||||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaat-cattagctacaatttctagcttcaagt 27266871  T
Q  216 agaat 220  Q
    |||||    
T  27266872 agaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 31708223 - 31708289
Alignment:
Q  121 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||| ||||||||| ||| |||||||||||||  ||||||| | |||||| |||||||||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 5407061 - 5406964
Alignment:
Q  61 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 160  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| |||| ||    || |||||||| ||||||||| ||| ||||||| ||||| | ||||    
T  5407061 aaaaattgattttgagtgaattgattctagctaaaattgagttgaaggta----aagttatgtttggatacattcatgtaaaagtgatttgaagagtaaa 5406966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 37335025 - 37335084
Alignment:
Q  128 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||| | | ||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaat 37335084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 40136096 - 40136214
Alignment:
Q  61 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 160  Q
    ||||||||||||||| |||||| |||||||| |||||||| | |||  ||| | | ||| |||||  |||||||  ||| ||| |||||| |||||| ||    
T  40136096 aaaaattgattttgaatgaattaattctggc-taaagtgacttgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaa 40136194  T
Q  161 ttcgagtgttaaaatcaatt 180  Q
    || || ||||||||||||||    
T  40136195 tttgattgttaaaatcaatt 40136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 3776667 - 3776557
Alignment:
Q  77 tgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatc 176  Q
    |||||||||||||||| ||| ||||| |||  |||    ||||||| || ||||||||  ||| |||||||||| | ||| ||||| |||||| |||||     
T  3776667 tgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaatt 3776568  T
Q  177 aattctagaat 187  Q
    |||||||||||    
T  3776567 aattctagaat 3776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 35253446 - 35253516
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 186  Q
    |||||| ||| || ||| || ||| |||||||||||||  ||||||| |||||| ||||||||||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 177  Q
    |||||||||| ||||| ||  ||| ||| |||||||||||| ||||| ||||||||||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 48548993 - 48549095
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 215  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||  |||| | |||||||||||||||||       || ||||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaat-cagaagctacaatttctagcttcaagt 48549089  T
Q  216 agaatc 221  Q
    ||||||    
T  48549090 agaatc 48549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 1233465 - 1233350
Alignment:
Q  62 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 161  Q
    |||||||||||| |||||||| ||| | | | ||  |||||  ||| ||| | ||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  1233465 aaaattgattttcattgaattaattttagttaaacatgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaat 1233366  T
Q  162 tcgagtgttaaaatca 177  Q
    | |||||| |||||||    
T  1233365 ttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 28287340 - 28287382
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattcta 183  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  28287340 aaagttagttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 213522 - 213587
Alignment:
Q  122 gtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||| ||| ||||| ||| |||||||||||||||| ||||| |||| | |||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaat 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 1514450 - 1514385
Alignment:
Q  115 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 180  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaatt 1514385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 6932104 - 6932205
Alignment:
Q  57 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 156  Q
    |||||||| |||||||||| ||||||||||||| || ||||||||| |||  ||| |  || |  |||| ||| ||||||||| || |||||||||||||    
T  6932104 tgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggattcattcgtgtaaaggtgagttgaacaa 6932203  T
Q  157 ta 158  Q
    ||    
T  6932204 ta 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 8382047 - 8381962
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 227  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||        || |||||||||||||||||||||||| |||||    
T  8382047 aaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaa-ctagaggctacaatttctagcttcaagtagaatcaattct 8381962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 20026168 - 20026212
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 185  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 24587993 - 24587949
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 185  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  24587993 aaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 52263625 - 52263689
Alignment:
Q  115 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaat 179  Q
    ||||||||||| ||||||||  ||| ||| |||||| ||||||||||| |||||| |||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 4458492 - 4458421
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||| ||| |||||||||  || ||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaat 4458421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 34915172 - 34915101
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||||  |||||||| ||| |||||||||||||  ||||| | | |||||| |||||||||||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 7790646 - 7790692
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||    
T  7790646 aaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaat 7790692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 47892393 - 47892438
Alignment:
Q  142 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaat 47892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 3016265 - 3016197
Alignment:
Q  119 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||| ||||||||| ||| ||||||||||||||  ||||||   |||| || ||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaat 3016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 10324928 - 10324988
Alignment:
Q  127 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||  ||| |||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaat 10324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 17284171 - 17284131
Alignment:
Q  147 agttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaat 17284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 30557608 - 30557539
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||| ||||| ||||||||| | | |||||||||||||| |||||||   |||| |||||||||||||||||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaat 30557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 30850393 - 30850445
Alignment:
Q  131 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 183  Q
    ||||| ||| |||||||||||||| ||||||| |  |||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattcta 30850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 35961501 - 35961437
Alignment:
Q  89 ggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 153  Q
    |||| ||||||||| |||| ||| |  ||||||||||| |||||||| ||| |||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 52339719 - 52339775
Alignment:
Q  128 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 184  Q
    |||||||||||| || |||| |||||||||||||| |||| | ||| ||||||||||    
T  52339719 atacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctag 52339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 16972005 - 16972110
Alignment:
Q  78 gaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 177  Q
    |||||||||| | || ||||||||| |||| ||| |  |||| |||||  |||||||| ||| ||||||| |||||||||||||| | || | |||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatca 16972104  T
Q  178 attcta 183  Q
    ||||||    
T  16972105 attcta 16972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 32927998 - 32927931
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 183  Q
    |||| ||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattcta 32927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 35495366 - 35495295
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| |||||||||   | ||||||| |||||||||||||| |||| | |||||||||| ||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaat 35495295  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 13384658 - 13384704
Alignment:
Q  141 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||||||| ||||||| | |||| |||||||||||||||||    
T  13384658 aaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaat 13384704  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 32767495 - 32767422
Alignment:
Q  116 atttatgtttcgatacattc--gtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||  ||||| ||| ||| |||| ||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaat 32767422  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 38386476 - 38386430
Alignment:
Q  62 aaaattgattttgattgaattgattctggcttaaagtgagtcgaaga 108  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  38386476 aaaattgattttgatagaattgattctggctaaaagtaagttgaaga 38386430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 2778677 - 2778577
Alignment:
Q  58 gacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaat 157  Q
    ||||||||||||||||   |||| ||||||| ||| ||||||||| ||||||||    |||||| ||| |||| |||  ||  |||||||||||||||||    
T  2778677 gacaaaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaat 2778578  T
Q  158 a 158  Q
    |    
T  2778577 a 2778577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 26100088 - 26100196
Alignment:
Q  79 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 178  Q
    ||||||||||| || |||  |||| |||| |||  | |||| ||||| ||| ||||  ||| |||||||||||||| ||||||| | |||| ||||||||    
T  26100088 aattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaa 26100187  T
Q  179 ttctagaat 187  Q
    || ||||||    
T  26100188 ttatagaat 26100196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 43024991 - 43024963
Alignment:
Q  57 tgacaaaaattgattttgattgaattgat 85  Q
    |||||||||||||||||||||||||||||    
T  43024991 tgacaaaaattgattttgattgaattgat 43024963  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 15368632 - 15368508
Alignment:
Q  62 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 161  Q
    |||||||||||||| |||||||||||||||| ||| ||||| ||||  ||    ||||||||||  |||||| | ||| ||||||| |||||||| | ||    
T  15368632 aaaattgattttgagtgaattgattctggctgaaattgagttgaagggaa-gtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatat 15368534  T
Q  162 tcgagtgttaaaatcaattctagaat 187  Q
    | |||||| || ||||||| ||||||    
T  15368533 ttgagtgtaaagatcaattatagaat 15368508  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 8591587 - 8591519
Alignment:
Q  116 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 184  Q
    |||||| ||| ||||||||| | | |||||||||||||||| ||||| |||||  ||||||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattctag 8591519  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 35138967 - 35139054
Alignment:
Q  81 ttgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 168  Q
    ||||||||| || ||| ||||| |||| ||| |  |||||||||  ||||||||| | | |||||||||||||||||||||| |||||    
T  35138967 ttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 35139054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 36640042 - 36639972
Alignment:
Q  117 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 187  Q
    ||||||||| ||||  ||| ||| |||||||| |||||| |||||| |||||| |||| ||||||||||||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaat 36639972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 7925468 - 7925431
Alignment:
Q  140 taaagtgagttgaacaataaattcgagtgttaaaatca 177  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7925468 taaagtgagttgaacaataaatttgagtgtaaaaatca 7925431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 9952555 - 9952600
Alignment:
Q  57 tgacaaaaattgattttgattgaattgattctggcttaaagtgagt 102  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||    
T  9952555 tgacaaaaattgattttgaatgaattgattatggataaaagtgagt 9952600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 9185020 - 9185064
Alignment:
Q  142 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 186  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  9185020 aagtgagttgaacgataaatttaaatgttaaaatcaattctagaa 9185064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 37886019 - 37886063
Alignment:
Q  118 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 162  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatt 37886063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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