View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_low_14 (Length: 271)
Name: NF3158_low_14
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 258
Target Start/End: Original strand, 27390907 - 27391127
Alignment:
| Q |
58 |
ggactttatccttaaaattatcagaatttggctactt----ttgagaaataatctgaagattaattcttttcaagctaacatcttcggcttgagtggtaa |
153 |
Q |
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| T |
27390907 |
ggactttatccttaaaattatcagaatttggctacttgagattgagaaataatctgaagattaattcttttcaagctaacatcttcggcttgagtggtag |
27391006 |
T |
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| Q |
154 |
ttgacaggatagaggtgatggacgttgaagagcagc----------------gtgtgtatctacaaacactatgacgaacaagtaaatatgtgccgaatc |
237 |
Q |
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| T |
27391007 |
ttgacaggataaaggtgatggacgttgaagagcagcttctgtaaaagaagcggtgtgtatctacaaacactatgacgatcaagtaaacgtgtgccgaata |
27391106 |
T |
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| Q |
238 |
tgcgagctttttaagttagaa |
258 |
Q |
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||||||||||||||||||||| |
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| T |
27391107 |
tgcgagctttttaagttagaa |
27391127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 27384421 - 27384552
Alignment:
| Q |
58 |
ggactttatccttaaaattatcagaatttggctactt-ttgagaaataatctgaagattaattcttttc-aagctaacatcttcggcttgagtggt---- |
151 |
Q |
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| T |
27384421 |
ggactttatccttaaaattatcagaatttggctacttattgag-aataatatgaagattaattcttttcaaagctaacatcttcggcttgagtggtcgtt |
27384519 |
T |
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| Q |
152 |
---aattgacaggatagaggtgatggacgttga |
181 |
Q |
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| T |
27384520 |
gacacttgacaggataaaggtgatggacgttga |
27384552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27384366 - 27384406
Alignment:
| Q |
1 |
ctcaaacacctttt-ttctcctatgtttattcatcctttaa |
40 |
Q |
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| T |
27384366 |
ctcaaacacctttttttctcctatgtttattcatcctttaa |
27384406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27390856 - 27390895
Alignment:
| Q |
1 |
ctcaaacaccttttttctcctatgtttattcatcctttaa |
40 |
Q |
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| T |
27390856 |
ctcaaacaccttttttcccctatttttattcatcctttaa |
27390895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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