View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_low_17 (Length: 249)
Name: NF3158_low_17
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 30757689 - 30757904
Alignment:
| Q |
1 |
caatcttatcaaccttgtcaacagccatcttatgtttgagccaagtgcaagcacgttgtgaccaataaatcatttagcg-gtgagagaaaaattctagaa |
99 |
Q |
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| T |
30757689 |
caatcttatcaaccttgtcaacaaccatcttatgtttgagccaagtgcaagcacgttgtgaccaat----catttagcaagtgagagaaaaattctagaa |
30757784 |
T |
|
| Q |
100 |
gccattcataagctactcccaatttaaatgcaaagccgtctctttcaaccattatttcatcaaagatacggagggaaaaatcaacatcaaataagacacg |
199 |
Q |
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| T |
30757785 |
gccattcataagctactcccaatttaaatgcaaagccatctctttcaaccattatttcatcaaagatatggagggaaaaatcaacatcaactaagacacg |
30757884 |
T |
|
| Q |
200 |
agcataattacgaaacacat |
219 |
Q |
| |
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|||||||||||||||||||| |
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| T |
30757885 |
agcataattacgaaacacat |
30757904 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 2178610 - 2178544
Alignment:
| Q |
144 |
tcaaccattatttcatcaaagatacggagggaaaaatcaacatcaaataagacacgagcataattac |
210 |
Q |
| |
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|
| T |
2178610 |
tcaaccataatttcatcaaatatacggtgtgaaaaatcaatgtcaactaaaacacgagcataattac |
2178544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 20600479 - 20600549
Alignment:
| Q |
118 |
ccaatttaaatgcaaagccgtctctttcaaccattatttcatcaaagatacggagggaaaaatcaacatca |
188 |
Q |
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| T |
20600479 |
ccaatttgaaagcgaagacgtctctttcaaccattatttcatcaaatatacggtaagaaaaatcaatatca |
20600549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 19737038 - 19736927
Alignment:
| Q |
99 |
agccattcataagctactcccaatttaaatgcaaagccgtctctttcaaccattatttcatcaaagatacggagggaaaaatcaacatcaaataagacac |
198 |
Q |
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|||||||| ||| | ||| |||||||||| | ||| |||||||||||||||||||| |||||| |||| | | |||||||||| ||||| || | | |
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| T |
19737038 |
agccattcgtaaaccacttccaatttaaaagtgaagtcgtctctttcaaccattattccatcaagtatacagcgagaaaaatcaatatcaaccaaaatgc |
19736939 |
T |
|
| Q |
199 |
gagcataattac |
210 |
Q |
| |
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|||||||||||| |
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|
| T |
19736938 |
gagcataattac |
19736927 |
T |
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