View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3158_low_18 (Length: 240)

Name: NF3158_low_18
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3158_low_18
NF3158_low_18
[»] chr5 (6 HSPs)
chr5 (177-240)||(12749653-12749716)
chr5 (177-240)||(12812745-12812808)
chr5 (177-240)||(12812676-12812739)
chr5 (187-240)||(12812607-12812660)
chr5 (177-240)||(12749584-12749647)
chr5 (199-240)||(12749515-12749556)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 12749716 - 12749653
Alignment:
Q  177 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12749716 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 12749653  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 12812808 - 12812745
Alignment:
Q  177 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812808 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 12812745  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 12812739 - 12812676
Alignment:
Q  177 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 240  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||  | |||||||||    
T  12812739 accaccatagcctcctccagctccacctcctttgccacctccgtagccagactcgccatgctct 12812676  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 12812660 - 12812607
Alignment:
Q  187 cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 240  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  12812660 cctcctccagccccacctccttcaccacctccatagccagaatcaccatgctct 12812607  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 12749647 - 12749584
Alignment:
Q  177 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctct 240  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||  | |||||||||    
T  12749647 accaccataacctcctccagctccacctcctttgccacctccgtagccagactcgccatgctct 12749584  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 12749556 - 12749515
Alignment:
Q  199 ccacctccttcaccacctccgtagccagaagcaccatgctct 240  Q
    |||||||||||||| ||||| ||||||||| |||||||||||    
T  12749556 ccacctccttcaccgcctccatagccagaatcaccatgctct 12749515  T

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