View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3158_low_2 (Length: 534)
Name: NF3158_low_2
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 30757175 - 30757685
Alignment:
| Q |
18 |
catatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacatcggacaaagcaaaatgaaaagaagtgtttgatttagggttccac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30757175 |
catatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacaccggacaaagcaaaatgaaaataagtgtttgatttagggttccac |
30757274 |
T |
|
| Q |
118 |
gcaatctgagccagtgtagtggacacttttgccgagtttttctgctataacagtataagcaacttgttcggcatttttaacttgagaatcattattaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30757275 |
gcaatctgagccagtgtagtggacacttgtgccgagtttttatgctataacagtataagcaacttgttcggcatttttaacttgagaatcattattaaca |
30757374 |
T |
|
| Q |
218 |
accttatctgcattaagaagtgtgggggttagaagtaacagggggttcagcatgacttgttggatgatcattagcaacaatgagctcttcggtattaatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
30757375 |
accttatctgcattaagaagtgtgggggttagaagtaacagggggttcaacatgacttgttggatgatcattagtaacgatgagctcttcggtattaatc |
30757474 |
T |
|
| Q |
318 |
agctcaccatgaagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggatatgctcttcattcacaatggcaataaccgcct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30757475 |
agctcaccatgaagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggatatgctcttcattcacaatggcaataaccgcct |
30757574 |
T |
|
| Q |
418 |
tattagtaattggtgctgcaaaagctttagaagaacctataccatcaggatctttcttttcaacatatttcagagtcatttgcttccgagcatgtgtagg |
517 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30757575 |
tattagtaattggcgctgcaaaagctttagaagaacctataccatcatgatcgttcttttcaacatatttcagagtcatttgcttccgagcatgtgtagg |
30757674 |
T |
|
| Q |
518 |
tttcttctcac |
528 |
Q |
| |
|
||||||||||| |
|
|
| T |
30757675 |
tttcttctcac |
30757685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University