View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_low_23 (Length: 212)
Name: NF3158_low_23
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 1443138 - 1442959
Alignment:
| Q |
15 |
cataggttattatttcataatatacaactatctttctctcatcttccttccagtgagacgtgtctcaagatgtggtatatcaagcaaatttggtaaccat |
114 |
Q |
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| T |
1443138 |
cataggttattatttcataatatacaactatctttctctcatcttccttccagtgagacgtgtctcaagatgtggtatatcaagcaaatttggtaaccat |
1443039 |
T |
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| Q |
115 |
ctcagagttgggctaagtggttaagaaatttatcaaccctaaattatgtcacctcacatctcttatttatgatgatcttt |
194 |
Q |
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| T |
1443038 |
ctcagagttgggctaagtggttaagaaatttatcaaccctaaattatgtcacctcacatctcttatttatgatgatcttt |
1442959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 1451072 - 1450894
Alignment:
| Q |
32 |
taatatacaactatctttctctcatcttccttccagtgagacgtgtctcaagatgtggt--------atatcaagcaaatttggtaaccatctcagag-- |
121 |
Q |
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| T |
1451072 |
taatatgcaactatgtttctctcatcttccttctagtgtcctgtgtctcaagatgtggtttgtgaacatatcaagcaaatttggtaaccatctcaaatgc |
1450973 |
T |
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| Q |
122 |
---ttgggctaagtggttaagaa--atttatcaaccctaaattatgtcacctca-catctcttatttatgatgatcttt |
194 |
Q |
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| T |
1450972 |
aatttggcctaagtggtcagaaataattgatcaaccctaaagtatgtcaccttaacatctcttatttatgatgatcttt |
1450894 |
T |
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